From 3350e871a80be2719beac89a63b54b3de5bcfe2b Mon Sep 17 00:00:00 2001 From: Navid Afkhami Date: Mon, 28 Aug 2023 12:34:18 +0000 Subject: [PATCH] gnu: Add r-classdiscovery. * gnu/packages/bioconductor.scm (r-classdiscovery): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f6e272cf8f..c3fe5db38a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13924,6 +13924,33 @@ interpreting functional enrichment results obtained from ORA or GSEA analyses. All the visualization methods are developed based on ggplot2 graphics.") (license license:artistic2.0))) +;; This is a CRAN package, but it depends on Bioconductor packages, so we +;; added it here. +(define-public r-classdiscovery + (package + (name "r-classdiscovery") + (version "3.4.0") + (source (origin + (method url-fetch) + (uri (cran-uri "ClassDiscovery" version)) + (sha256 + (base32 + "06l7jvpcdynij05hb0ka33zpg7xdyqyzfzx24s0bnlspp83yc62s")))) + (properties `((upstream-name . "ClassDiscovery"))) + (build-system r-build-system) + (propagated-inputs + (list r-biobase r-cluster r-mclust r-oompabase r-oompadata)) + (native-inputs + (list r-xtable)) ;for vignettes + (home-page "https://oompa.r-forge.r-project.org/") + (synopsis + "Classes and methods for \"Class Discovery\" with Microarrays or Proteomics") + (description + "This package defines classes for \"class discovery\" in the OOMPA project. +Class discovery primarily consists of unsupervised clustering methods with +attempts to assess their statistical significance.") + (license license:asl2.0))) + (define-public r-clusterprofiler (package (name "r-clusterprofiler")