gnu: Add r-giotto.
* gnu/packages/bioinformatics.scm (r-giotto): New variable.
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@ -11972,6 +11972,64 @@ cells with similar identification cards in the different cytometric profiles
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is then merged.")
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(license license:gpl2))))
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(define-public r-giotto
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(let ((commit "68d7390dce87223cac11d4d8f31705fe0144d011")
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(revision "1"))
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(package
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(name "r-giotto")
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(version (git-version "1.1.1" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/RubD/Giotto/")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0mv60khc05wrxzr4ir6cirn7dpqvgwan5hm00lmafsyalr51nf5i"))))
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(properties `((upstream-name . "Giotto")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-clusterr
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r-complexheatmap
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r-cowplot
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r-data-table
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r-dbscan
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r-deldir
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r-farver
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r-fitdistrplus
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r-ggdendro
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r-ggplot2
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r-ggraph
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r-ggrepel
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r-igraph
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r-irlba
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r-lfa
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r-limma
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r-magick
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r-magrittr
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r-matrix
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r-matrixstats
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r-plotly
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r-qvalue
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r-r-utils
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r-rcolorbrewer
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r-rcpp
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r-reshape2
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r-reticulate
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r-rfast
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r-rlang
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r-rtsne
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r-scales
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r-uwot))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/RubD/Giotto/")
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(synopsis "Spatial single-cell transcriptomics toolbox")
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(description
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"This package provides a toolbox to process, analyze and visualize
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spatial single-cell expression data.")
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(license license:expat))))
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(define-public gffread
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;; We cannot use the tagged release because it is not in sync with gclib.
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;; See https://github.com/gpertea/gffread/issues/26
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