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gnu: r-maaslin2: Update to 1.13.0. 

* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.13.0.
[propagated-inputs]: Remove r-mumin and r-rmarkdown.
[arguments]: Remove.
master
Ricardo Wurmus 2023-04-28 17:59:56 +02:00
parent d1da543257
commit 343036f151
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GPG Key ID: 197A5888235FACAC
1 changed files with 2 additions and 21 deletions
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gnu/packages/bioconductor.scm
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@ -7278,32 +7278,15 @@ different technologies, including microarrays, RNA-seq, and quantitative PCR.")
(define-public r-maaslin2
(package
(name "r-maaslin2")
(version "1.12.0")
(version "1.13.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Maaslin2" version))
(sha256
(base32 "0ncvsywn9f8766gjb8nxzg82p3w30g8pjs85sy8s0bz9ilanpy89"))))
(base32 "05xha6y6ssf80l4xb7skbjafpqww2d85l4b6wn72r5djidyxxw6y"))))
(properties `((upstream-name . "Maaslin2")))
(build-system r-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-after 'check 'remove-timestamps
(lambda _
(with-directory-excursion
(string-append #$output "/site-library/Maaslin2/doc/demo_output/")
;; Delete this log file with timestamps.
(delete-file "maaslin2.log")
;; Replace PDF timestamps with an arbitrary fixed timestamp.
(with-fluids ((%default-port-encoding "ISO-8859-1"))
(substitute* (find-files "." "\\.pdf$")
(("/CreationDate \\(D:.*\\)")
"/CreationDate (D:20230301143558)")
(("/ModDate \\(D:.*\\)")
"/ModDate (D:20230301143558)")))))))))
(propagated-inputs
(list r-biglm
r-car
@ -7320,14 +7303,12 @@ different technologies, including microarrays, RNA-seq, and quantitative PCR.")
r-logging
r-lpsymphony
r-mass
r-mumin
r-metagenomeseq
r-optparse
r-pbapply
r-pcapp
r-pheatmap
r-pscl
r-rmarkdown
r-robustbase
r-vegan))
(native-inputs (list r-knitr))