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gnu: Add r-bionet.

* gnu/packages/bioconductor.scm (r-bionet): New variable.
master
Ricardo Wurmus 2021-09-07 14:38:24 +02:00
parent 4f6b3821eb
commit 35526b62a8
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@ -14333,6 +14333,39 @@ intra and interspecies module preservation statistics between different
networks.")
(license license:gpl3)))
(define-public r-bionet
(package
(name "r-bionet")
(version "1.52.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BioNet" version))
(sha256
(base32
"15rk1jfv4h1mxvr5bs0qmq6fdnza7zcmksigqxb46fs7f6znr3yi"))))
(properties `((upstream-name . "BioNet")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-graph" ,r-graph)
("r-igraph" ,r-igraph)
("r-rbgl" ,r-rbgl)))
(home-page "http://bioconductor.org/packages/release/bioc/html/BioNet.html")
(synopsis "Functional analysis of biological networks")
(description
"This package provides functions for the integrated analysis of
protein-protein interaction networks and the detection of functional modules.
Different datasets can be integrated into the network by assigning p-values of
statistical tests to the nodes of the network. E.g. p-values obtained from
the differential expression of the genes from an Affymetrix array are assigned
to the nodes of the network. By fitting a beta-uniform mixture model and
calculating scores from the p-values, overall scores of network regions can be
calculated and an integer linear programming algorithm identifies the maximum
scoring subnetwork.")
(license license:gpl2+)))
(define-public r-tximeta
(package
(name "r-tximeta")