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@ -14333,6 +14333,39 @@ intra and interspecies module preservation statistics between different
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networks.")
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(license license:gpl3)))
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(define-public r-bionet
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(package
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(name "r-bionet")
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(version "1.52.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "BioNet" version))
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(sha256
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(base32
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"15rk1jfv4h1mxvr5bs0qmq6fdnza7zcmksigqxb46fs7f6znr3yi"))))
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(properties `((upstream-name . "BioNet")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biobase" ,r-biobase)
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("r-graph" ,r-graph)
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("r-igraph" ,r-igraph)
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("r-rbgl" ,r-rbgl)))
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(home-page "http://bioconductor.org/packages/release/bioc/html/BioNet.html")
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(synopsis "Functional analysis of biological networks")
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(description
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"This package provides functions for the integrated analysis of
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protein-protein interaction networks and the detection of functional modules.
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Different datasets can be integrated into the network by assigning p-values of
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statistical tests to the nodes of the network. E.g. p-values obtained from
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the differential expression of the genes from an Affymetrix array are assigned
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to the nodes of the network. By fitting a beta-uniform mixture model and
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calculating scores from the p-values, overall scores of network regions can be
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calculated and an integer linear programming algorithm identifies the maximum
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scoring subnetwork.")
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(license license:gpl2+)))
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(define-public r-tximeta
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(package
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(name "r-tximeta")
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