parent
4f6b3821eb
commit
35526b62a8
|
@ -14333,6 +14333,39 @@ intra and interspecies module preservation statistics between different
|
||||||
networks.")
|
networks.")
|
||||||
(license license:gpl3)))
|
(license license:gpl3)))
|
||||||
|
|
||||||
|
(define-public r-bionet
|
||||||
|
(package
|
||||||
|
(name "r-bionet")
|
||||||
|
(version "1.52.0")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (bioconductor-uri "BioNet" version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"15rk1jfv4h1mxvr5bs0qmq6fdnza7zcmksigqxb46fs7f6znr3yi"))))
|
||||||
|
(properties `((upstream-name . "BioNet")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(propagated-inputs
|
||||||
|
`(("r-annotationdbi" ,r-annotationdbi)
|
||||||
|
("r-biobase" ,r-biobase)
|
||||||
|
("r-graph" ,r-graph)
|
||||||
|
("r-igraph" ,r-igraph)
|
||||||
|
("r-rbgl" ,r-rbgl)))
|
||||||
|
(home-page "http://bioconductor.org/packages/release/bioc/html/BioNet.html")
|
||||||
|
(synopsis "Functional analysis of biological networks")
|
||||||
|
(description
|
||||||
|
"This package provides functions for the integrated analysis of
|
||||||
|
protein-protein interaction networks and the detection of functional modules.
|
||||||
|
Different datasets can be integrated into the network by assigning p-values of
|
||||||
|
statistical tests to the nodes of the network. E.g. p-values obtained from
|
||||||
|
the differential expression of the genes from an Affymetrix array are assigned
|
||||||
|
to the nodes of the network. By fitting a beta-uniform mixture model and
|
||||||
|
calculating scores from the p-values, overall scores of network regions can be
|
||||||
|
calculated and an integer linear programming algorithm identifies the maximum
|
||||||
|
scoring subnetwork.")
|
||||||
|
(license license:gpl2+)))
|
||||||
|
|
||||||
(define-public r-tximeta
|
(define-public r-tximeta
|
||||||
(package
|
(package
|
||||||
(name "r-tximeta")
|
(name "r-tximeta")
|
||||||
|
|
Reference in New Issue