gnu: r-copyhelper: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-copyhelper): Move from here... * gnu/packages/bioconductor.scm (r-copyhelper): ...to here. [source]: Repalce 'string-append' by 'bioconductor-uri' with 'experiment.master
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@ -1128,6 +1128,30 @@ average profile and heatmap of peaks binding to TSS regions, genomic
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annotation, distance to TSS, and overlap of peaks or genes.")
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(license license:artistic2.0)))
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(define-public r-copyhelper
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(package
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(name "r-copyhelper")
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(version "1.6.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "CopyhelpeR" version 'experiment))
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(sha256
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(base32
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"0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq"))))
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(properties `((upstream-name . "CopyhelpeR")))
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(build-system r-build-system)
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(home-page "https://bioconductor.org/packages/CopyhelpeR/")
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(synopsis "Helper files for CopywriteR")
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(description
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"This package contains the helper files that are required to run the
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Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content
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and mappability files for the reference genomes hg18, hg19, hg38, mm9 and
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mm10. In addition, it contains a blacklist filter to remove regions that
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display copy number variation. Files are stored as GRanges objects from the
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GenomicRanges Bioconductor package.")
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(license license:gpl2)))
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(define-public r-genelendatabase
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(package
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(name "r-genelendatabase")
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@ -8486,32 +8486,6 @@ analysis, variant tools is project based and provides a whole set of tools to
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manipulate and analyze genetic variants.")
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(license license:gpl3+)))
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(define-public r-copyhelper
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(package
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(name "r-copyhelper")
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(version "1.6.0")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://bioconductor.org/packages/release/"
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"data/experiment/src/contrib/CopyhelpeR_"
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version ".tar.gz"))
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(sha256
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(base32
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"0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq"))))
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(properties `((upstream-name . "CopyhelpeR")))
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(build-system r-build-system)
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(home-page "https://bioconductor.org/packages/CopyhelpeR/")
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(synopsis "Helper files for CopywriteR")
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(description
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"This package contains the helper files that are required to run the
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Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content
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and mappability files for the reference genomes hg18, hg19, hg38, mm9 and
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mm10. In addition, it contains a blacklist filter to remove regions that
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display copy number variation. Files are stored as GRanges objects from the
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GenomicRanges Bioconductor package.")
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(license license:gpl2)))
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(define-public r-copywriter
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(package
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(name "r-copywriter")
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