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gnu: r-copyhelper: Move to (gnu packages bioconductor).

* gnu/packages/bioinformatics.scm (r-copyhelper): Move from here...
* gnu/packages/bioconductor.scm (r-copyhelper): ...to here.
[source]: Repalce 'string-append' by 'bioconductor-uri' with 'experiment.
master
zimoun 2021-05-21 22:26:20 +02:00 committed by Ricardo Wurmus
parent 31e50e1f48
commit 36cb01066c
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GPG Key ID: 197A5888235FACAC
2 changed files with 24 additions and 26 deletions

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@ -1128,6 +1128,30 @@ average profile and heatmap of peaks binding to TSS regions, genomic
annotation, distance to TSS, and overlap of peaks or genes.") annotation, distance to TSS, and overlap of peaks or genes.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-copyhelper
(package
(name "r-copyhelper")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "CopyhelpeR" version 'experiment))
(sha256
(base32
"0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq"))))
(properties `((upstream-name . "CopyhelpeR")))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/CopyhelpeR/")
(synopsis "Helper files for CopywriteR")
(description
"This package contains the helper files that are required to run the
Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content
and mappability files for the reference genomes hg18, hg19, hg38, mm9 and
mm10. In addition, it contains a blacklist filter to remove regions that
display copy number variation. Files are stored as GRanges objects from the
GenomicRanges Bioconductor package.")
(license license:gpl2)))
(define-public r-genelendatabase (define-public r-genelendatabase
(package (package
(name "r-genelendatabase") (name "r-genelendatabase")

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@ -8486,32 +8486,6 @@ analysis, variant tools is project based and provides a whole set of tools to
manipulate and analyze genetic variants.") manipulate and analyze genetic variants.")
(license license:gpl3+))) (license license:gpl3+)))
(define-public r-copyhelper
(package
(name "r-copyhelper")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://bioconductor.org/packages/release/"
"data/experiment/src/contrib/CopyhelpeR_"
version ".tar.gz"))
(sha256
(base32
"0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq"))))
(properties `((upstream-name . "CopyhelpeR")))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/CopyhelpeR/")
(synopsis "Helper files for CopywriteR")
(description
"This package contains the helper files that are required to run the
Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content
and mappability files for the reference genomes hg18, hg19, hg38, mm9 and
mm10. In addition, it contains a blacklist filter to remove regions that
display copy number variation. Files are stored as GRanges objects from the
GenomicRanges Bioconductor package.")
(license license:gpl2)))
(define-public r-copywriter (define-public r-copywriter
(package (package
(name "r-copywriter") (name "r-copywriter")