gnu: r-copyhelper: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-copyhelper): Move from here... * gnu/packages/bioconductor.scm (r-copyhelper): ...to here. [source]: Repalce 'string-append' by 'bioconductor-uri' with 'experiment.master
parent
31e50e1f48
commit
36cb01066c
|
@ -1128,6 +1128,30 @@ average profile and heatmap of peaks binding to TSS regions, genomic
|
||||||
annotation, distance to TSS, and overlap of peaks or genes.")
|
annotation, distance to TSS, and overlap of peaks or genes.")
|
||||||
(license license:artistic2.0)))
|
(license license:artistic2.0)))
|
||||||
|
|
||||||
|
(define-public r-copyhelper
|
||||||
|
(package
|
||||||
|
(name "r-copyhelper")
|
||||||
|
(version "1.6.0")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (bioconductor-uri "CopyhelpeR" version 'experiment))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq"))))
|
||||||
|
(properties `((upstream-name . "CopyhelpeR")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(home-page "https://bioconductor.org/packages/CopyhelpeR/")
|
||||||
|
(synopsis "Helper files for CopywriteR")
|
||||||
|
(description
|
||||||
|
"This package contains the helper files that are required to run the
|
||||||
|
Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content
|
||||||
|
and mappability files for the reference genomes hg18, hg19, hg38, mm9 and
|
||||||
|
mm10. In addition, it contains a blacklist filter to remove regions that
|
||||||
|
display copy number variation. Files are stored as GRanges objects from the
|
||||||
|
GenomicRanges Bioconductor package.")
|
||||||
|
(license license:gpl2)))
|
||||||
|
|
||||||
(define-public r-genelendatabase
|
(define-public r-genelendatabase
|
||||||
(package
|
(package
|
||||||
(name "r-genelendatabase")
|
(name "r-genelendatabase")
|
||||||
|
|
|
@ -8486,32 +8486,6 @@ analysis, variant tools is project based and provides a whole set of tools to
|
||||||
manipulate and analyze genetic variants.")
|
manipulate and analyze genetic variants.")
|
||||||
(license license:gpl3+)))
|
(license license:gpl3+)))
|
||||||
|
|
||||||
(define-public r-copyhelper
|
|
||||||
(package
|
|
||||||
(name "r-copyhelper")
|
|
||||||
(version "1.6.0")
|
|
||||||
(source
|
|
||||||
(origin
|
|
||||||
(method url-fetch)
|
|
||||||
(uri (string-append "https://bioconductor.org/packages/release/"
|
|
||||||
"data/experiment/src/contrib/CopyhelpeR_"
|
|
||||||
version ".tar.gz"))
|
|
||||||
(sha256
|
|
||||||
(base32
|
|
||||||
"0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq"))))
|
|
||||||
(properties `((upstream-name . "CopyhelpeR")))
|
|
||||||
(build-system r-build-system)
|
|
||||||
(home-page "https://bioconductor.org/packages/CopyhelpeR/")
|
|
||||||
(synopsis "Helper files for CopywriteR")
|
|
||||||
(description
|
|
||||||
"This package contains the helper files that are required to run the
|
|
||||||
Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content
|
|
||||||
and mappability files for the reference genomes hg18, hg19, hg38, mm9 and
|
|
||||||
mm10. In addition, it contains a blacklist filter to remove regions that
|
|
||||||
display copy number variation. Files are stored as GRanges objects from the
|
|
||||||
GenomicRanges Bioconductor package.")
|
|
||||||
(license license:gpl2)))
|
|
||||||
|
|
||||||
(define-public r-copywriter
|
(define-public r-copywriter
|
||||||
(package
|
(package
|
||||||
(name "r-copywriter")
|
(name "r-copywriter")
|
||||||
|
|
Reference in New Issue