gnu: r-deseq2: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-deseq2): Move from here... * gnu/packages/bioconductor.scm (r-deseq2): ...to here.master
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@ -1487,6 +1487,44 @@ structure.")
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microarrays.")
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(license license:artistic2.0)))
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(define-public r-deseq2
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(package
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(name "r-deseq2")
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(version "1.30.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "DESeq2" version))
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(sha256
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(base32
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"0q2f9cywrcmp1p7ii8f45g4dk4hsnjflq3yqhsxgnpv9fw338qpp"))))
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(properties `((upstream-name . "DESeq2")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-genefilter" ,r-genefilter)
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("r-geneplotter" ,r-geneplotter)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-iranges" ,r-iranges)
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("r-locfit" ,r-locfit)
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("r-rcpp" ,r-rcpp)
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("r-rcpparmadillo" ,r-rcpparmadillo)
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("r-s4vectors" ,r-s4vectors)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/DESeq2")
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(synopsis "Differential gene expression analysis")
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(description
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"This package provides functions to estimate variance-mean dependence in
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count data from high-throughput nucleotide sequencing assays and test for
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differential expression based on a model using the negative binomial
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distribution.")
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(license license:lgpl3+)))
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(define-public r-genefilter
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(package
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(name "r-genefilter")
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@ -7387,44 +7387,6 @@ includes software to
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")
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(license license:cc0))))
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(define-public r-deseq2
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(package
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(name "r-deseq2")
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(version "1.30.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "DESeq2" version))
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(sha256
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(base32
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"0q2f9cywrcmp1p7ii8f45g4dk4hsnjflq3yqhsxgnpv9fw338qpp"))))
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(properties `((upstream-name . "DESeq2")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-genefilter" ,r-genefilter)
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("r-geneplotter" ,r-geneplotter)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-iranges" ,r-iranges)
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("r-locfit" ,r-locfit)
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("r-rcpp" ,r-rcpp)
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("r-rcpparmadillo" ,r-rcpparmadillo)
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("r-s4vectors" ,r-s4vectors)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/DESeq2")
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(synopsis "Differential gene expression analysis")
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(description
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"This package provides functions to estimate variance-mean dependence in
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count data from high-throughput nucleotide sequencing assays and test for
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differential expression based on a model using the negative binomial
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distribution.")
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(license license:lgpl3+)))
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(define-public r-dexseq
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(package
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(name "r-dexseq")
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