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gnu: r-deseq2: Move to (gnu packages bioconductor).

* gnu/packages/bioinformatics.scm (r-deseq2): Move from here...
* gnu/packages/bioconductor.scm (r-deseq2): ...to here.
master
zimoun 2021-03-08 18:57:55 +01:00 committed by Ricardo Wurmus
parent a35ea5fed9
commit 373545855d
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GPG Key ID: 197A5888235FACAC
2 changed files with 38 additions and 38 deletions

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@ -1487,6 +1487,44 @@ structure.")
microarrays.")
(license license:artistic2.0)))
(define-public r-deseq2
(package
(name "r-deseq2")
(version "1.30.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DESeq2" version))
(sha256
(base32
"0q2f9cywrcmp1p7ii8f45g4dk4hsnjflq3yqhsxgnpv9fw338qpp"))))
(properties `((upstream-name . "DESeq2")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-genefilter" ,r-genefilter)
("r-geneplotter" ,r-geneplotter)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
("r-locfit" ,r-locfit)
("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/DESeq2")
(synopsis "Differential gene expression analysis")
(description
"This package provides functions to estimate variance-mean dependence in
count data from high-throughput nucleotide sequencing assays and test for
differential expression based on a model using the negative binomial
distribution.")
(license license:lgpl3+)))
(define-public r-genefilter
(package
(name "r-genefilter")

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@ -7387,44 +7387,6 @@ includes software to
")
(license license:cc0))))
(define-public r-deseq2
(package
(name "r-deseq2")
(version "1.30.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DESeq2" version))
(sha256
(base32
"0q2f9cywrcmp1p7ii8f45g4dk4hsnjflq3yqhsxgnpv9fw338qpp"))))
(properties `((upstream-name . "DESeq2")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-genefilter" ,r-genefilter)
("r-geneplotter" ,r-geneplotter)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
("r-locfit" ,r-locfit)
("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/DESeq2")
(synopsis "Differential gene expression analysis")
(description
"This package provides functions to estimate variance-mean dependence in
count data from high-throughput nucleotide sequencing assays and test for
differential expression based on a model using the negative binomial
distribution.")
(license license:lgpl3+)))
(define-public r-dexseq
(package
(name "r-dexseq")