me/guix
Archived
1
0
Fork 0
Code Activity

gnu: r-rliger: Strip jar timestamps.

Browse source 
* gnu/packages/cran.scm (r-rliger)[arguments]: Add phase
'strip-jar-timestamps; remove trailing #T; add ant-build-system modules.
[source]: Simplify snippet.
[native-inputs]: Add zip.
This commit is contained in:
Ricardo Wurmus 2023-04-29 16:34:17 +02:00
parent 46d78bf045
commit 376c52a949
No known key found for this signature in database
GPG key ID: 197A5888235FACAC
1 changed files with 14 additions and 8 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

22
gnu/packages/cran.scm
View file

@ -24654,21 +24654,26 @@ multiple plots.")
"16dzwwcpw6n78pxlc5w3kraigki35ix7zhd2cbx5f3y60bbkhlmx"))
(modules '((guix build utils)))
(snippet
'(begin
(delete-file "inst/java/ModularityOptimizer.jar")
#t))))
'(delete-file "inst/java/ModularityOptimizer.jar"))))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(list
#:modules '((guix build r-build-system)
((guix build ant-build-system) #:prefix ant:)
(guix build utils))
#:imported-modules `((guix build ant-build-system)
,@%r-build-system-modules)
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'build-java-part
(lambda* (#:key inputs #:allow-other-keys)
(invoke "unzip" (assoc-ref inputs "optimizer-src"))
(for-each (lambda (file) (invoke "javac" file))
(find-files "." "\\.java$"))
(apply invoke "jar" "cf" "inst/java/ModularityOptimizer.jar"
(find-files "." "\\.class$"))
#t)))))
(find-files "." "\\.class$"))))
(add-after 'install 'strip-jar-timestamps
(assoc-ref ant:%standard-phases 'strip-jar-timestamps)))))
(propagated-inputs
(list r-cowplot
r-dosnow
@ -24702,7 +24707,8 @@ multiple plots.")
(base32
"01hmm6sapcmldvayknqx2w4cav3qv71mwwkdkwj4qgq6dss09g18"))))
("unzip" ,unzip)
("r-knitr" ,r-knitr))) ; for vignettes
("zip" ,zip)
("r-knitr" ,r-knitr))) ; for vignettes
(home-page "https://github.com/MacoskoLab/liger")
(synopsis "Integrate and analyze multiple single-cell datasets")
(description