gnu: Add r-aggregatebiovar.
* gnu/packages/bioconductor.scm (r-aggregatebiovar): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>master
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@ -1821,6 +1821,40 @@ and meta analysis at both gene and gene-set levels of the data from each
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experiment.")
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(license license:gpl2+)))
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(define-public r-aggregatebiovar
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(package
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(name "r-aggregatebiovar")
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(version "1.4.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "aggregateBioVar" version))
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(sha256
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(base32
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"1wbfp1pf62di6pzxsf36lmzk6y9dllz1n4iv3mhpb1x8cvy4hqqk"))))
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(properties `((upstream-name . "aggregateBioVar")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-matrix
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r-rlang
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r-s4vectors
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r-singlecellexperiment
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r-summarizedexperiment
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r-tibble))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/jasonratcliff/aggregateBioVar")
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(synopsis "Differential gene expression analysis for multi-subject scRNA-seq")
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(description
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"This package @code{aggregateBioVar} contains tools to summarize single
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cell gene expression profiles at the level of subject for single cell RNA-seq
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data collected from more than one subject (e.g. biological sample or technical
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replicates). A @code{SingleCellExperiment} object is taken as input and
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converted to a list of @code{SummarizedExperiment} objects, where each list
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element corresponds to an assigned cell type. The @code{SummarizedExperiment}
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objects contain aggregate gene-by-subject count matrices and inter-subject
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column metadata for individual subjects that can be processed using downstream
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bulk RNA-seq tools.")
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(license license:gpl3)))
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(define-public r-aneufinder
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(package
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(name "r-aneufinder")
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