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gnu: Add r-aggregatebiovar.

* gnu/packages/bioconductor.scm (r-aggregatebiovar): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
master
Mădălin Ionel Patrașcu 2022-04-27 13:44:36 +02:00 committed by Ricardo Wurmus
parent 73fe0dab50
commit 37f584592a
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@ -1821,6 +1821,40 @@ and meta analysis at both gene and gene-set levels of the data from each
experiment.")
(license license:gpl2+)))
(define-public r-aggregatebiovar
(package
(name "r-aggregatebiovar")
(version "1.4.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "aggregateBioVar" version))
(sha256
(base32
"1wbfp1pf62di6pzxsf36lmzk6y9dllz1n4iv3mhpb1x8cvy4hqqk"))))
(properties `((upstream-name . "aggregateBioVar")))
(build-system r-build-system)
(propagated-inputs
(list r-matrix
r-rlang
r-s4vectors
r-singlecellexperiment
r-summarizedexperiment
r-tibble))
(native-inputs (list r-knitr))
(home-page "https://github.com/jasonratcliff/aggregateBioVar")
(synopsis "Differential gene expression analysis for multi-subject scRNA-seq")
(description
"This package @code{aggregateBioVar} contains tools to summarize single
cell gene expression profiles at the level of subject for single cell RNA-seq
data collected from more than one subject (e.g. biological sample or technical
replicates). A @code{SingleCellExperiment} object is taken as input and
converted to a list of @code{SummarizedExperiment} objects, where each list
element corresponds to an assigned cell type. The @code{SummarizedExperiment}
objects contain aggregate gene-by-subject count matrices and inter-subject
column metadata for individual subjects that can be processed using downstream
bulk RNA-seq tools.")
(license license:gpl3)))
(define-public r-aneufinder
(package
(name "r-aneufinder")