gnu: bcftools: Fix building on aarch64.
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file. * gnu/packages/bioinformatics.scm (bcftools)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Register it.master
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2d430f2923
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3837108e40
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@ -527,6 +527,7 @@ dist_patch_DATA = \
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%D%/packages/patches/awesome-reproducible-png.patch \
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%D%/packages/patches/awesome-reproducible-png.patch \
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%D%/packages/patches/azr3.patch \
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%D%/packages/patches/azr3.patch \
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%D%/packages/patches/bash-completion-directories.patch \
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%D%/packages/patches/bash-completion-directories.patch \
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%D%/packages/patches/bcftools-regidx-unsigned-char.patch \
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%D%/packages/patches/binutils-ld-new-dtags.patch \
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%D%/packages/patches/binutils-ld-new-dtags.patch \
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%D%/packages/patches/binutils-loongson-workaround.patch \
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%D%/packages/patches/binutils-loongson-workaround.patch \
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%D%/packages/patches/binutils-mips-bash-bug.patch \
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%D%/packages/patches/binutils-mips-bash-bug.patch \
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@ -311,6 +311,7 @@ BAM files.")
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(sha256
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(sha256
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(base32
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(base32
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"0093hkkvxmbwfaa7905s6185jymynvg42kq6sxv7fili11l5mxwz"))
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"0093hkkvxmbwfaa7905s6185jymynvg42kq6sxv7fili11l5mxwz"))
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(patches (search-patches "bcftools-regidx-unsigned-char.patch"))
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(modules '((guix build utils)))
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(modules '((guix build utils)))
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(snippet
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(snippet
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;; Delete bundled htslib.
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;; Delete bundled htslib.
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@ -0,0 +1,16 @@
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Description: Fix test-regidx argument parsing on archs with unsigned char
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On architectures where char is unsigned "c >= 0" was always true.
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Author: Adrian Bunk <bunk@debian.org>
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Bug-Debian: https://bugs.debian.org/865060
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--- a/test/test-regidx.c
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+++ b/test/test-regidx.c
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@@ -336,7 +336,7 @@
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{"seed",1,0,'s'},
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{0,0,0,0}
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};
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- char c;
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+ int c;
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int seed = (int)time(NULL);
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while ((c = getopt_long(argc, argv, "hvs:",loptions,NULL)) >= 0)
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{
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