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gnu: Add r-htscluster.

* gnu/packages/bioconductor.scm (r-htscluster): New variable.
master
Ricardo Wurmus 2019-03-04 15:00:18 +01:00
parent 4254b480c9
commit 3a0babacdc
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@ -1199,3 +1199,32 @@ sequencing data.")
algorithm to segment DNA copy number data and identify genomic regions with algorithm to segment DNA copy number data and identify genomic regions with
abnormal copy number.") abnormal copy number.")
(license license:gpl2+))) (license license:gpl2+)))
;; This is a CRAN package, but it uncharacteristically depends on a
;; Bioconductor package.
(define-public r-htscluster
(package
(name "r-htscluster")
(version "2.0.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "HTSCluster" version))
(sha256
(base32
"0wnbfh6hdx8692jilgmv8sys1zm6fqc6mim7vvjhyqlmpm8gm0kg"))))
(properties `((upstream-name . "HTSCluster")))
(build-system r-build-system)
(propagated-inputs
`(("r-capushe" ,r-capushe)
("r-edger" ,r-edger)
("r-plotrix" ,r-plotrix)))
(home-page "https://cran.r-project.org/web/packages/HTSCluster")
(synopsis "Clustering high-throughput transcriptome sequencing (HTS) data")
(description
"This package provides a Poisson mixture model is implemented to cluster
genes from high-throughput transcriptome sequencing (RNA-seq) data. Parameter
estimation is performed using either the EM or CEM algorithm, and the slope
heuristics are used for model selection (i.e., to choose the number of
clusters).")
(license license:gpl3+)))