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gnu: r-systempiper: Update to 1.18.0. 

* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.0.
[propagated-inputs]: Replace r-batchjobs with r-batchtools; add r-yaml.
master
Ricardo Wurmus 2019-05-05 23:51:59 +02:00
parent 9bcbca135b
commit 3addf736d5
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1 changed files with 4 additions and 3 deletions
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@ -6944,19 +6944,19 @@ ungapped alignment formats.")
(define-public r-systempiper
(package
(name "r-systempiper")
(version "1.16.1")
(version "1.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "systemPipeR" version))
(sha256
(base32
"0qzydz87rld2nhwzbfgrw5jfgh8maa9y54mjx9c4285m11qj2shq"))))
"1063vdf4g2i5xyabwvzkqfxd2j8s4zs6z4zxf8lx2ccjddhkn37a"))))
(properties `((upstream-name . "systemPipeR")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotate" ,r-annotate)
("r-batchjobs" ,r-batchjobs)
("r-batchtools" ,r-batchtools)
("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-deseq2" ,r-deseq2)
@ -6972,6 +6972,7 @@ ungapped alignment formats.")
("r-rsamtools" ,r-rsamtools)
("r-shortread" ,r-shortread)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-yaml" ,r-yaml)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://github.com/tgirke/systemPipeR")
(synopsis "Next generation sequencing workflow and reporting environment")