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gnu: Add r-milor.

* gnu/packages/bioconductor.scm (r-milor): New variable.
master
Ricardo Wurmus 2022-08-31 23:06:25 +02:00
parent 58ff455328
commit 3bf7bdccee
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@ -8697,6 +8697,54 @@ to identify differentially methylated regions in epigenetic epidemiology
studies.")
(license license:artistic2.0)))
(define-public r-milor
(package
(name "r-milor")
(version "1.4.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "miloR" version))
(sha256
(base32
"1jz9p3grnczx0bpdw6j64x21in8zgm3qy19hmm296har2rx9m5zs"))))
(properties `((upstream-name . "miloR")))
(build-system r-build-system)
(propagated-inputs
(list r-biocgenerics
r-biocneighbors
r-biocparallel
r-biocsingular
r-cowplot
r-dplyr
r-edger
r-ggbeeswarm
r-ggplot2
r-ggraph
r-ggrepel
r-gtools
r-igraph
r-irlba
r-limma
r-matrix
r-matrixstats
r-patchwork
r-rcolorbrewer
r-s4vectors
r-singlecellexperiment
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr))
(native-inputs (list r-knitr))
(home-page "https://marionilab.github.io/miloR")
(synopsis "Differential neighbourhood abundance testing on a graph")
(description
"Milo performs single-cell differential abundance testing. Cell states
are modelled as representative neighbourhoods on a nearest neighbour graph.
Hypothesis testing is performed using a negative bionomial generalized linear
model.")
(license license:gpl3)))
(define-public r-minfi
(package
(name "r-minfi")