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gnu: r-rcas: Update to 1.14.0. 

* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.14.0.
[propagated-inputs]: Remove r-annotationdbi, r-biomart, r-dbi, r-knitr,
r-motifrg, r-org-hs-eg-db, and r-topgo; add r-bsgenome, r-gprofiler2,
r-iranges, and r-ranger.
[native-inputs]: Add r-knitr.
master
Ricardo Wurmus 2020-06-12 16:19:30 +02:00
parent 261d931406
commit 3c53617efc
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1 changed files with 9 additions and 10 deletions
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gnu/packages/bioinformatics.scm
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@ -8694,24 +8694,22 @@ paired-end data.")
(define-public r-rcas
(package
(name "r-rcas")
(version "1.12.0")
(version "1.14.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "RCAS" version))
(sha256
(base32
"1s3gvvxi1029d1vfwnjh21nnw3mlx08kcwz63891hml9y850cvsn"))))
"0f812pgv3ys1zv4n9sqkgm01hj4cdd0i0h85dqbhkwd94zl6cavl"))))
(properties `((upstream-name . "RCAS")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biocgenerics" ,r-biocgenerics)
("r-biomart" ,r-biomart)
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-cowplot" ,r-cowplot)
("r-data-table" ,r-data-table)
("r-dbi" ,r-dbi)
("r-dt" ,r-dt)
("r-genomation" ,r-genomation)
("r-genomeinfodb" ,r-genomeinfodb)
@ -8719,20 +8717,21 @@ paired-end data.")
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-ggseqlogo" ,r-ggseqlogo)
("r-knitr" ,r-knitr)
("r-motifrg" ,r-motifrg)
("r-org-hs-eg-db" ,r-org-hs-eg-db)
("r-gprofiler2" ,r-gprofiler2)
("r-iranges" ,r-iranges)
("r-pbapply" ,r-pbapply)
("r-pheatmap" ,r-pheatmap)
("r-plotly" ,r-plotly)
("r-plotrix" ,r-plotrix)
("r-proxy" ,r-proxy)
("r-ranger" ,r-ranger)
("r-rsqlite" ,r-rsqlite)
("r-rtracklayer" ,r-rtracklayer)
("r-rmarkdown" ,r-rmarkdown)
("r-s4vectors" ,r-s4vectors)
("r-topgo" ,r-topgo)
("pandoc" ,ghc-pandoc)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(synopsis "RNA-centric annotation system")
(description
"RCAS aims to be a standalone RNA-centric annotation system that provides