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gnu: r-deseq2: Update to 1.28.1.

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* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.28.1.
[propagated-inputs]: Remove r-hmisc.
[native-inputs]: Add r-knitr.
This commit is contained in:
Ricardo Wurmus 2020-06-12 15:55:57 +02:00
parent 5fdea056c9
commit 3d7de4ed82
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GPG key ID: 197A5888235FACAC
1 changed files with 4 additions and 3 deletions
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gnu/packages/bioinformatics.scm
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@ -6975,14 +6975,14 @@ high-throughput sequencing experiments.")
(define-public r-deseq2 (define-public r-deseq2
(package (package
(name "r-deseq2") (name "r-deseq2")
(version "1.26.0") (version "1.28.1")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (bioconductor-uri "DESeq2" version)) (uri (bioconductor-uri "DESeq2" version))
(sha256 (sha256
(base32 (base32
"1lmbhznfs8dz9ipd53z4ccwvwxqwzx1ayw56jlrvlsambaj8fash")))) "0xh12c2skr0bbv893p05gvbismkcnqw8zwh7yz4wmycgajfzg2pp"))))
(properties `((upstream-name . "DESeq2"))) (properties `((upstream-name . "DESeq2")))
(build-system r-build-system) (build-system r-build-system)
(propagated-inputs (propagated-inputs
@ -6993,13 +6993,14 @@ high-throughput sequencing experiments.")
("r-geneplotter" ,r-geneplotter) ("r-geneplotter" ,r-geneplotter)
("r-genomicranges" ,r-genomicranges) ("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2) ("r-ggplot2" ,r-ggplot2)
("r-hmisc" ,r-hmisc)
("r-iranges" ,r-iranges) ("r-iranges" ,r-iranges)
("r-locfit" ,r-locfit) ("r-locfit" ,r-locfit)
("r-rcpp" ,r-rcpp) ("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo) ("r-rcpparmadillo" ,r-rcpparmadillo)
("r-s4vectors" ,r-s4vectors) ("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment))) ("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/DESeq2") (home-page "https://bioconductor.org/packages/DESeq2")
(synopsis "Differential gene expression analysis") (synopsis "Differential gene expression analysis")
(description (description