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gnu: Add r-rtcga.

* gnu/packages/bioconductor.scm (r-rtcga): New variable.
Ricardo Wurmus 2023-08-28 17:23:18 +02:00
parent 3886a2b8b5
commit 3e203183f8
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@ -9081,6 +9081,51 @@ tab-delimited (tabix) files.")
"This package models a RESTful service as if it were a nested R list.")
(license license:artistic2.0)))
(define-public r-rtcga
(package
(name "r-rtcga")
(version "1.30.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "RTCGA" version))
(sha256
(base32
"1y7ciq1270dc1c9y490fygrsylyzwl52fqi1vj7r75hy3rnwnv25"))))
(properties `((upstream-name . "RTCGA")))
(build-system r-build-system)
(propagated-inputs (list r-assertthat
r-data-table
r-dplyr
r-ggplot2
r-ggthemes
r-htmltools
r-knitr
r-purrr
r-rcurl
r-rmarkdown
r-rvest
r-scales
r-stringi
r-survival
r-survminer
r-viridis
r-xml
r-xml2))
(native-inputs (list r-knitr))
(home-page "https://rtcga.github.io/RTCGA/")
(synopsis "The Cancer Genome Atlas data integration")
(description
"The Cancer Genome Atlas (TCGA) Data Portal provides a platform for
researchers to search, download, and analyze data sets generated by TCGA. It
contains clinical information, genomic characterization data, and high level
sequence analysis of the tumor genomes. The key is to understand genomics to
improve cancer care. RTCGA package offers download and integration of the
variety and volume of TCGA data using patient barcode key, what enables easier
data possession. This may have an benefcial infuence on impact on development
of science and improvement of patients treatment. Furthermore, RTCGA package
transforms TCGA data to tidy form which is convenient to use.")
(license license:gpl2)))
(define-public r-rtcgatoolbox
(package
(name "r-rtcgatoolbox")