gnu: Add r-rtcga.
* gnu/packages/bioconductor.scm (r-rtcga): New variable.
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@ -9081,6 +9081,51 @@ tab-delimited (tabix) files.")
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"This package models a RESTful service as if it were a nested R list.")
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(license license:artistic2.0)))
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(define-public r-rtcga
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(package
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(name "r-rtcga")
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(version "1.30.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "RTCGA" version))
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(sha256
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(base32
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"1y7ciq1270dc1c9y490fygrsylyzwl52fqi1vj7r75hy3rnwnv25"))))
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(properties `((upstream-name . "RTCGA")))
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(build-system r-build-system)
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(propagated-inputs (list r-assertthat
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r-data-table
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r-dplyr
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r-ggplot2
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r-ggthemes
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r-htmltools
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r-knitr
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r-purrr
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r-rcurl
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r-rmarkdown
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r-rvest
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r-scales
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r-stringi
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r-survival
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r-survminer
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r-viridis
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r-xml
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r-xml2))
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(native-inputs (list r-knitr))
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(home-page "https://rtcga.github.io/RTCGA/")
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(synopsis "The Cancer Genome Atlas data integration")
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(description
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"The Cancer Genome Atlas (TCGA) Data Portal provides a platform for
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researchers to search, download, and analyze data sets generated by TCGA. It
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contains clinical information, genomic characterization data, and high level
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sequence analysis of the tumor genomes. The key is to understand genomics to
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improve cancer care. RTCGA package offers download and integration of the
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variety and volume of TCGA data using patient barcode key, what enables easier
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data possession. This may have an benefcial infuence on impact on development
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of science and improvement of patients treatment. Furthermore, RTCGA package
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transforms TCGA data to tidy form which is convenient to use.")
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(license license:gpl2)))
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(define-public r-rtcgatoolbox
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(package
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(name "r-rtcgatoolbox")
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