gnu: cd-hit: Update to 4.8.1.
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.8.1. [arguments]: Do not use quasiquote; remove trailing #T from build phases. [inputs]: Add zlib.master
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@ -2429,26 +2429,27 @@ are not included due to their size.")
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(define-public cd-hit
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(package
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(name "cd-hit")
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(version "4.6.8")
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(version "4.8.1")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://github.com/weizhongli/cdhit"
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"/releases/download/V" version
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"/cd-hit-v" version
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"-2017-0621-source.tar.gz"))
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"-2019-0228.tar.gz"))
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(sha256
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(base32
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"1b4mwm2520ixjbw57sil20f9iixzw4bkdqqwgg1fc3pzm6rz4zmn"))))
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"1phmfhgcpyfd6kj7jwzw976613lcpv1wc2pzfdfaxla062x2s5r6"))))
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(build-system gnu-build-system)
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(arguments
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`(#:tests? #f ; there are no tests
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#:make-flags
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;; Executables are copied directly to the PREFIX.
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,#~(list (string-append "PREFIX=" #$output "/bin")
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;; Support longer sequences (e.g. Pacbio sequences)
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"MAX_SEQ=60000000")
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#:phases
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(modify-phases %standard-phases
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(list
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#:tests? #f ; there are no tests
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#:make-flags
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;; Executables are copied directly to the PREFIX.
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#~(list (string-append "PREFIX=" #$output "/bin")
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;; Support longer sequences (e.g. Pacbio sequences)
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"MAX_SEQ=60000000")
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#:phases
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'(modify-phases %standard-phases
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;; No "configure" script
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(delete 'configure)
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;; Remove sources of non-determinism
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@ -2458,15 +2459,13 @@ are not included due to their size.")
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((" \\(built on \" __DATE__ \"\\)") ""))
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(substitute* "cdhit-common.c++"
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(("__DATE__") "\"0\"")
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(("\", %s, \" __TIME__ \"\\\\n\", date") ""))
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#t))
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(("\", %s, \" __TIME__ \"\\\\n\", date") ""))))
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;; The "install" target does not create the target directory.
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(add-before 'install 'create-target-dir
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(lambda* (#:key outputs #:allow-other-keys)
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(mkdir-p (string-append (assoc-ref outputs "out") "/bin"))
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#t)))))
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(mkdir-p (string-append (assoc-ref outputs "out") "/bin")))))))
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(inputs
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(list perl))
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(list perl zlib))
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(home-page "http://weizhongli-lab.org/cd-hit/")
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(synopsis "Cluster and compare protein or nucleotide sequences")
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(description
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