gnu: Add r-bifet.
* gnu/packages/bioconductor.scm (r-bifet): New variable.
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@ -6650,3 +6650,31 @@ algorithm which is more efficient for larger data sets.")
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"This is a package for biclustering analysis and exploration of
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"This is a package for biclustering analysis and exploration of
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results.")
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results.")
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(license license:gpl2)))
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(license license:gpl2)))
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(define-public r-bifet
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(package
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(name "r-bifet")
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(version "1.6.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "BiFET" version))
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(sha256
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(base32
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"0ck1d6hxd4f40hfz8p2z5xmjbz79yhrf6fisjka2xzk5v9fm4p4k"))))
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(properties `((upstream-name . "BiFET")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-genomicranges" ,r-genomicranges)
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("r-poibin" ,r-poibin)))
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(home-page "https://bioconductor.org/packages/BiFET")
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(synopsis "Bias-free footprint enrichment test")
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(description
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"BiFET identifies @dfn{transcription factors} (TFs) whose footprints are
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over-represented in target regions compared to background regions after
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correcting for the bias arising from the imbalance in read counts and GC
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contents between the target and background regions. For a given TF k, BiFET
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tests the null hypothesis that the target regions have the same probability of
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having footprints for the TF k as the background regions while correcting for
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the read count and GC content bias.")
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(license license:gpl3)))
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