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gnu: Add r-deco.

* gnu/packages/bioconductor.scm (r-deco): New variable.
Mădălin Ionel Patrașcu 2022-10-30 01:16:04 +02:00 committed by Ricardo Wurmus
parent 22c8783dff
commit 41461b6e22
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@ -3178,6 +3178,48 @@ knowledge can achieve semi-supervised deconvolution of mixtures.")
biological sequences.")
(license license:gpl3)))
(define-public r-deco
(package
(name "r-deco")
(version "1.12.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "deco" version))
(sha256
(base32
"18n5zgln33c79jbjzjlivs8ihyg8zci6minfqlvagxgzcpa67k0m"))))
(properties `((upstream-name . "deco")))
(build-system r-build-system)
(propagated-inputs
(list r-ade4
r-annotationdbi
r-biobase
r-biocparallel
r-biocstyle
r-cluster
r-foreign
r-gdata
r-ggplot2
r-gplots
r-gridextra
r-limma
r-locfit
r-made4
r-rcolorbrewer
r-reshape2
r-scatterplot3d
r-sfsmisc
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/fjcamlab/deco")
(synopsis "Decomposing heterogeneous cohorts using omic data profiling")
(description
"This package discovers differential features in hetero- and homogeneous
omic data by a two-step method including subsampling LIMMA and NSCA. DECO
reveals feature associations to hidden subclasses not exclusively related to
higher deregulation levels.")
(license license:gpl3+)))
(define-public r-deconvr
(package
(name "r-deconvr")