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gnu: Add pbcopper.

* gnu/packages/bioinformatics.scm (pbcopper): New variable.
master
Ricardo Wurmus 2021-12-07 16:00:22 +01:00
parent 8dcf062f28
commit 4195a877cb
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1 changed files with 36 additions and 0 deletions

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@ -569,6 +569,42 @@ BED, GFF/GTF, VCF.")
`(("samtools" ,samtools)
("zlib" ,zlib)))))
(define-public pbcopper
;; This is the latest commit at the time of this writing.
(let ((commit "ad4143afd25a0bd6adc977c544865c992a515841")
(revision "1"))
(package
(name "pbcopper")
(version (git-version "1.9.0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/PacificBiosciences/pbcopper")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1qxkbpdkamfisnk36lpi1vdvf3p1lg2hdqna3xgd94pz52bwbmp7"))))
(build-system meson-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'patch-meson-files
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "meson.build"
(("-msse4.1") "")))))))
(inputs
`(("boost" ,boost)))
(native-inputs
`(("googletest" ,googletest)
("pkg-config" ,pkg-config)))
(home-page "https://github.com/PacificBiosciences/pbcopper")
(synopsis "Data structures, algorithms, and utilities for PacBio C++ applications")
(description
"The pbcopper library provides a suite of data structures, algorithms,
and utilities for PacBio C++ applications.")
(license license:bsd-3))))
(define-public pbbam
(package
(name "pbbam")