parent
794ff347a9
commit
4272000661
|
@ -10034,6 +10034,52 @@ interpretation of members of a collection of association statistics on a
|
||||||
family of feature/genome hypotheses.")
|
family of feature/genome hypotheses.")
|
||||||
(license license:artistic2.0)))
|
(license license:artistic2.0)))
|
||||||
|
|
||||||
|
(define-public r-gviz
|
||||||
|
(package
|
||||||
|
(name "r-gviz")
|
||||||
|
(version "1.22.0")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (bioconductor-uri "Gviz" version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"1lrw65a8426wpxw975wjcaiacpp6fqa00nif1yxigyankbfs23c8"))))
|
||||||
|
(properties `((upstream-name . "Gviz")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(propagated-inputs
|
||||||
|
`(("r-annotationdbi" ,r-annotationdbi)
|
||||||
|
("r-biobase" ,r-biobase)
|
||||||
|
("r-biocgenerics" ,r-biocgenerics)
|
||||||
|
("r-biomart" ,r-biomart)
|
||||||
|
("r-biostrings" ,r-biostrings)
|
||||||
|
("r-biovizbase" ,r-biovizbase)
|
||||||
|
("r-bsgenome" ,r-bsgenome)
|
||||||
|
("r-digest" ,r-digest)
|
||||||
|
("r-genomeinfodb" ,r-genomeinfodb)
|
||||||
|
("r-genomicalignments" ,r-genomicalignments)
|
||||||
|
("r-genomicfeatures" ,r-genomicfeatures)
|
||||||
|
("r-genomicranges" ,r-genomicranges)
|
||||||
|
("r-iranges" ,r-iranges)
|
||||||
|
("r-lattice" ,r-lattice)
|
||||||
|
("r-latticeextra" ,r-latticeextra)
|
||||||
|
("r-matrixstats" ,r-matrixstats)
|
||||||
|
("r-rcolorbrewer" ,r-rcolorbrewer)
|
||||||
|
("r-rsamtools" ,r-rsamtools)
|
||||||
|
("r-rtracklayer" ,r-rtracklayer)
|
||||||
|
("r-s4vectors" ,r-s4vectors)
|
||||||
|
("r-xvector" ,r-xvector)))
|
||||||
|
(home-page "https://bioconductor.org/packages/Gviz")
|
||||||
|
(synopsis "Plotting data and annotation information along genomic coordinates")
|
||||||
|
(description
|
||||||
|
"Genomic data analyses requires integrated visualization of known genomic
|
||||||
|
information and new experimental data. Gviz uses the biomaRt and the
|
||||||
|
rtracklayer packages to perform live annotation queries to Ensembl and UCSC
|
||||||
|
and translates this to e.g. gene/transcript structures in viewports of the
|
||||||
|
grid graphics package. This results in genomic information plotted together
|
||||||
|
with your data.")
|
||||||
|
(license license:artistic2.0)))
|
||||||
|
|
||||||
(define-public r-qvalue
|
(define-public r-qvalue
|
||||||
(package
|
(package
|
||||||
(name "r-qvalue")
|
(name "r-qvalue")
|
||||||
|
|
Reference in New Issue