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gnu: r-systempiper: Update to 2.0.0. 

* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.0.
[propagated-inputs]: Remove r-annotate, r-assertthat, r-batchtools, r-deseq2, r-dot,
r-edger, r-genomicfeatures, r-go-db, r-gostats, r-iranges, r-limma,
r-pheatmap, r-rjson, r-rsvg, r-testthat, and r-variantannotation; add
r-biocgenerics and r-htmlwidgets.
master
Ricardo Wurmus 2021-11-04 22:04:09 +00:00
parent c3d9b4b097
commit 442a355026
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GPG Key ID: 197A5888235FACAC
1 changed files with 5 additions and 19 deletions
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gnu/packages/bioconductor.scm
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@ -4442,44 +4442,30 @@ unmodeled, or latent sources of noise.")
(define-public r-systempiper
(package
(name "r-systempiper")
(version "1.26.3")
(version "2.0.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "systemPipeR" version))
(sha256
(base32
"01l35l5zj87qkarrbal9la6kshk3j7k8hy3iimv3gdnnz4axmvs7"))))
"0kibr47z7ml13hpl955qcr4wp2z4nq7gjiinyk30wivrwrng5sg1"))))
(properties `((upstream-name . "systemPipeR")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotate" ,r-annotate)
("r-assertthat" ,r-assertthat)
("r-batchtools" ,r-batchtools)
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-crayon" ,r-crayon)
("r-deseq2" ,r-deseq2)
("r-dot" ,r-dot)
("r-edger" ,r-edger)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-go-db" ,r-go-db)
("r-gostats" ,r-gostats)
("r-iranges" ,r-iranges)
("r-limma" ,r-limma)
("r-htmlwidgets" ,r-htmlwidgets)
("r-magrittr" ,r-magrittr)
("r-pheatmap" ,r-pheatmap)
("r-rjson" ,r-rjson)
("r-rsamtools" ,r-rsamtools)
("r-rsvg" ,r-rsvg)
("r-s4vectors" ,r-s4vectors)
("r-shortread" ,r-shortread)
("r-stringr" ,r-stringr)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-testthat" ,r-testthat)
("r-yaml" ,r-yaml)
("r-variantannotation" ,r-variantannotation)))
("r-yaml" ,r-yaml)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/tgirke/systemPipeR")