gnu: Add r-conqur.
* gnu/packages/bioinformatics.scm (r-conqur): New variable.
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@ -777,6 +777,47 @@ each with 3000 cells. There are two samples which are bone marrow (BM), and
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two samples which are cord blood (CB).")
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two samples which are cord blood (CB).")
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(license license:gpl3))))
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(license license:gpl3))))
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(define-public r-conqur
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(let ((commit "c7a88794efd4ecfe4d96988dceeec3b410222e48")
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(revision "1"))
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(package
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(name "r-conqur")
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(version (git-version "2.0" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/wdl2459/ConQuR")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"19a7p2l67mgjy99i5ksjxlhzaqmrnyi1vzvwnhgnx2jrr6crj7rq"))))
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(properties `((upstream-name . "ConQuR")))
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(build-system r-build-system)
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(propagated-inputs (list r-ade4
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r-ape
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r-compositions
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r-cqrreg
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r-doparallel
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r-dplyr
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r-fastdummies
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r-glmnet
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r-gplots
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r-gunifrac
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r-quantreg
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r-randomforest
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r-rocr
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r-vegan))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/wdl2459/ConQuR")
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(synopsis "Batch effects removal for microbiome data")
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(description
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"This package conducts batch effects removal from a taxa read count
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table by a conditional quantile regression method. The distributional
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attributes of microbiome data - zero-inflation and over-dispersion, are
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simultaneously considered.")
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(license license:gpl3))))
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(define-public r-p2data
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(define-public r-p2data
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(let ((commit "7d4c0e17d7899f9d9b08ab2bf455abe150912f4c")
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(let ((commit "7d4c0e17d7899f9d9b08ab2bf455abe150912f4c")
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(revision "1"))
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(revision "1"))
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