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gnu: Add r-conqur.

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* gnu/packages/bioinformatics.scm (r-conqur): New variable.
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Ricardo Wurmus 2023-03-15 18:31:23 +01:00
parent 8309556cf3
commit 4496ff34a3
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1 changed files with 41 additions and 0 deletions
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gnu/packages/bioinformatics.scm
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@ -777,6 +777,47 @@ each with 3000 cells. There are two samples which are bone marrow (BM), and
two samples which are cord blood (CB).")
(license license:gpl3))))
(define-public r-conqur
(let ((commit "c7a88794efd4ecfe4d96988dceeec3b410222e48")
(revision "1"))
(package
(name "r-conqur")
(version (git-version "2.0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/wdl2459/ConQuR")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"19a7p2l67mgjy99i5ksjxlhzaqmrnyi1vzvwnhgnx2jrr6crj7rq"))))
(properties `((upstream-name . "ConQuR")))
(build-system r-build-system)
(propagated-inputs (list r-ade4
r-ape
r-compositions
r-cqrreg
r-doparallel
r-dplyr
r-fastdummies
r-glmnet
r-gplots
r-gunifrac
r-quantreg
r-randomforest
r-rocr
r-vegan))
(native-inputs (list r-knitr))
(home-page "https://github.com/wdl2459/ConQuR")
(synopsis "Batch effects removal for microbiome data")
(description
"This package conducts batch effects removal from a taxa read count
table by a conditional quantile regression method. The distributional
attributes of microbiome data - zero-inflation and over-dispersion, are
simultaneously considered.")
(license license:gpl3))))
(define-public r-p2data
(let ((commit "7d4c0e17d7899f9d9b08ab2bf455abe150912f4c")
(revision "1"))