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gnu: Add r-txdbmaker.

* gnu/packages/bioconductor.scm (r-txdbmaker): New variable.

Change-Id: I2e236b42117525a48917604ea14396ff661b72f7
master
Ricardo Wurmus 2024-05-07 12:24:23 +02:00
parent cf3471cc9e
commit 45b4f78687
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1 changed files with 41 additions and 0 deletions

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@ -12298,6 +12298,47 @@ dependencies between GO terms can be implemented and applied.")
;; Any version of the LGPL applies.
(license license:lgpl2.1+)))
(define-public r-txdbmaker
(package
(name "r-txdbmaker")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "txdbmaker" version))
(sha256
(base32 "099x6v4crp953jcgqipj0001kxg7gv5h0r4mmvh1cg7j69w0zd5m"))))
(properties `((upstream-name . "txdbmaker")))
(build-system r-build-system)
(propagated-inputs (list r-annotationdbi
r-biobase
r-biocgenerics
r-biocio
r-biomart
r-dbi
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-httr
r-iranges
r-rjson
r-rsqlite
r-rtracklayer
r-s4vectors
r-ucsc-utils))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/txdbmaker")
(synopsis "Tools for making TxDb objects from genomic annotations")
(description
"This package provides a set of tools for making @code{TxDb} objects from
genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files).
These tools allow the user to download the genomic locations of transcripts,
exons, and CDS, for a given assembly, and to import them in a @code{TxDb}
object. @code{TxDb} objects are implemented in the @code{GenomicFeatures}
package, together with flexible methods for extracting the desired features in
convenient formats.")
(license license:artistic2.0)))
(define-public r-tximport
(package
(name "r-tximport")