gnu: Add r-txdbmaker.
* gnu/packages/bioconductor.scm (r-txdbmaker): New variable. Change-Id: I2e236b42117525a48917604ea14396ff661b72f7master
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@ -12298,6 +12298,47 @@ dependencies between GO terms can be implemented and applied.")
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;; Any version of the LGPL applies.
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(license license:lgpl2.1+)))
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(define-public r-txdbmaker
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(package
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(name "r-txdbmaker")
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(version "1.0.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "txdbmaker" version))
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(sha256
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(base32 "099x6v4crp953jcgqipj0001kxg7gv5h0r4mmvh1cg7j69w0zd5m"))))
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(properties `((upstream-name . "txdbmaker")))
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(build-system r-build-system)
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(propagated-inputs (list r-annotationdbi
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r-biobase
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r-biocgenerics
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r-biocio
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r-biomart
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r-dbi
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r-genomeinfodb
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r-genomicfeatures
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r-genomicranges
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r-httr
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r-iranges
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r-rjson
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r-rsqlite
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r-rtracklayer
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r-s4vectors
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r-ucsc-utils))
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(native-inputs (list r-knitr))
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(home-page "https://bioconductor.org/packages/txdbmaker")
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(synopsis "Tools for making TxDb objects from genomic annotations")
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(description
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"This package provides a set of tools for making @code{TxDb} objects from
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genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files).
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These tools allow the user to download the genomic locations of transcripts,
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exons, and CDS, for a given assembly, and to import them in a @code{TxDb}
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object. @code{TxDb} objects are implemented in the @code{GenomicFeatures}
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package, together with flexible methods for extracting the desired features in
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convenient formats.")
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(license license:artistic2.0)))
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(define-public r-tximport
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(package
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(name "r-tximport")
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