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gnu: r-bamsignals: Move to (gnu packages bioconductor).

* gnu/packages/bioinformatics.scm (r-bamsignals): Move from here...
* gnu/packages/bioconductor.scm (r-bamsignals): ...to here.
master
zimoun 2021-05-21 22:26:12 +02:00 committed by Ricardo Wurmus
parent 043c309d15
commit 45b6db4fb4
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2 changed files with 30 additions and 30 deletions

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@ -2109,6 +2109,36 @@ standalone, be utilized in other packages, or be wrapped up in higher-level
classes.")
(license license:gpl2+)))
(define-public r-bamsignals
(package
(name "r-bamsignals")
(version "1.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "bamsignals" version))
(sha256
(base32
"0p3r9z9z5sfkd0b951cgr751k4z0yviyn1jfw9d4fcnyld7g1jxv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rcpp" ,r-rcpp)
("r-rhtslib" ,r-rhtslib)
("r-zlibbioc" ,r-zlibbioc)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/bamsignals")
(synopsis "Extract read count signals from bam files")
(description
"This package efficiently obtains count vectors from indexed bam
files. It counts the number of nucleotide sequence reads in given genomic
ranges and it computes reads profiles and coverage profiles. It also handles
paired-end data.")
(license license:gpl2+)))
(define-public r-biobase
(package
(name "r-biobase")

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@ -8046,36 +8046,6 @@ characteristic tag shift values in these assays.")
secondary structure and comparative analysis in R.")
(license license:gpl3+)))
(define-public r-bamsignals
(package
(name "r-bamsignals")
(version "1.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "bamsignals" version))
(sha256
(base32
"0p3r9z9z5sfkd0b951cgr751k4z0yviyn1jfw9d4fcnyld7g1jxv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rcpp" ,r-rcpp)
("r-rhtslib" ,r-rhtslib)
("r-zlibbioc" ,r-zlibbioc)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/bamsignals")
(synopsis "Extract read count signals from bam files")
(description
"This package efficiently obtains count vectors from indexed bam
files. It counts the number of nucleotide sequence reads in given genomic
ranges and it computes reads profiles and coverage profiles. It also handles
paired-end data.")
(license license:gpl2+)))
(define-public r-rcas
(package
(name "r-rcas")