gnu: r-bamsignals: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bamsignals): Move from here... * gnu/packages/bioconductor.scm (r-bamsignals): ...to here.master
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@ -2109,6 +2109,36 @@ standalone, be utilized in other packages, or be wrapped up in higher-level
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classes.")
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classes.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-bamsignals
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(package
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(name "r-bamsignals")
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(version "1.22.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "bamsignals" version))
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(sha256
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(base32
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"0p3r9z9z5sfkd0b951cgr751k4z0yviyn1jfw9d4fcnyld7g1jxv"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-rcpp" ,r-rcpp)
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("r-rhtslib" ,r-rhtslib)
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("r-zlibbioc" ,r-zlibbioc)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/bamsignals")
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(synopsis "Extract read count signals from bam files")
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(description
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"This package efficiently obtains count vectors from indexed bam
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files. It counts the number of nucleotide sequence reads in given genomic
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ranges and it computes reads profiles and coverage profiles. It also handles
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paired-end data.")
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(license license:gpl2+)))
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(define-public r-biobase
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(define-public r-biobase
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(package
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(package
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(name "r-biobase")
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(name "r-biobase")
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@ -8046,36 +8046,6 @@ characteristic tag shift values in these assays.")
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secondary structure and comparative analysis in R.")
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secondary structure and comparative analysis in R.")
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public r-bamsignals
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(package
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(name "r-bamsignals")
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(version "1.22.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "bamsignals" version))
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(sha256
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(base32
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"0p3r9z9z5sfkd0b951cgr751k4z0yviyn1jfw9d4fcnyld7g1jxv"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-rcpp" ,r-rcpp)
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("r-rhtslib" ,r-rhtslib)
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("r-zlibbioc" ,r-zlibbioc)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/bamsignals")
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(synopsis "Extract read count signals from bam files")
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(description
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"This package efficiently obtains count vectors from indexed bam
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files. It counts the number of nucleotide sequence reads in given genomic
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ranges and it computes reads profiles and coverage profiles. It also handles
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paired-end data.")
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(license license:gpl2+)))
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(define-public r-rcas
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(define-public r-rcas
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(package
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(package
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(name "r-rcas")
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(name "r-rcas")
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