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gnu: Add r-gprofiler2.

* gnu/packages/cran.scm (r-gprofiler2): New variable.
master
Ricardo Wurmus 2020-06-12 15:54:42 +02:00
parent f9311eaa7c
commit 45f54b418b
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@ -182,6 +182,53 @@ gene identifier conversion and mapping homologous genes across related
organisms via the @code{g:Profiler} toolkit.")
(license license:gpl2+)))
(define-public r-gprofiler2
(package
(name "r-gprofiler2")
(version "0.1.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "gprofiler2" version))
(sha256
(base32
"112hmmvdwg8xz90w1bsbzc55y4xi9jj4dqy0q4bsgp49x58r92rb"))))
(properties `((upstream-name . "gprofiler2")))
(build-system r-build-system)
(propagated-inputs
`(("r-crosstalk" ,r-crosstalk)
("r-dplyr" ,r-dplyr)
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-jsonlite" ,r-jsonlite)
("r-plotly" ,r-plotly)
("r-rcurl" ,r-rcurl)
("r-tidyr" ,r-tidyr)
("r-viridislite" ,r-viridislite)))
(native-inputs `(("r-knitr" ,r-knitr)))
(home-page "https://cran.r-project.org/web/packages/gprofiler2/")
(synopsis "Interface to the g:Profiler toolset")
(description
"This package provides a toolset for functional enrichment analysis and
visualization, gene/protein/SNP identifier conversion and mapping orthologous
genes across species via @url{https://biit.cs.ut.ee/gprofiler,g:Profiler}.
The main tools are:
@enumerate
@item @code{g:GOSt}, functional enrichment analysis and visualization of gene
lists;
@item @code{g:Convert}, gene/protein/transcript identifier conversion across
various namespaces;
@item @code{g:Orth}, orthology search across species;
@item @code{g:SNPense}, mapping SNP rs identifiers to chromosome positions,
genes and variant effects.
@end enumerate
This package is an R interface corresponding to the 2019 update of
@code{g:Profiler} and provides access to versions @code{e94_eg41_p11} and
higher.")
(license license:gpl2+)))
(define-public r-oenb
(package
(name "r-oenb")