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@ -182,6 +182,53 @@ gene identifier conversion and mapping homologous genes across related
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organisms via the @code{g:Profiler} toolkit.")
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(license license:gpl2+)))
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(define-public r-gprofiler2
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(package
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(name "r-gprofiler2")
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(version "0.1.9")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "gprofiler2" version))
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(sha256
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(base32
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"112hmmvdwg8xz90w1bsbzc55y4xi9jj4dqy0q4bsgp49x58r92rb"))))
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(properties `((upstream-name . "gprofiler2")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-crosstalk" ,r-crosstalk)
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("r-dplyr" ,r-dplyr)
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("r-ggplot2" ,r-ggplot2)
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("r-gridextra" ,r-gridextra)
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("r-jsonlite" ,r-jsonlite)
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("r-plotly" ,r-plotly)
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("r-rcurl" ,r-rcurl)
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("r-tidyr" ,r-tidyr)
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("r-viridislite" ,r-viridislite)))
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(native-inputs `(("r-knitr" ,r-knitr)))
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(home-page "https://cran.r-project.org/web/packages/gprofiler2/")
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(synopsis "Interface to the g:Profiler toolset")
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(description
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"This package provides a toolset for functional enrichment analysis and
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visualization, gene/protein/SNP identifier conversion and mapping orthologous
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genes across species via @url{https://biit.cs.ut.ee/gprofiler,g:Profiler}.
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The main tools are:
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@enumerate
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@item @code{g:GOSt}, functional enrichment analysis and visualization of gene
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lists;
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@item @code{g:Convert}, gene/protein/transcript identifier conversion across
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various namespaces;
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@item @code{g:Orth}, orthology search across species;
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@item @code{g:SNPense}, mapping SNP rs identifiers to chromosome positions,
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genes and variant effects.
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@end enumerate
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This package is an R interface corresponding to the 2019 update of
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@code{g:Profiler} and provides access to versions @code{e94_eg41_p11} and
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higher.")
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(license license:gpl2+)))
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(define-public r-oenb
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(package
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(name "r-oenb")
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