diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7c37f8eb59..9fe33b803b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -182,6 +182,53 @@ gene identifier conversion and mapping homologous genes across related organisms via the @code{g:Profiler} toolkit.") (license license:gpl2+))) +(define-public r-gprofiler2 + (package + (name "r-gprofiler2") + (version "0.1.9") + (source + (origin + (method url-fetch) + (uri (cran-uri "gprofiler2" version)) + (sha256 + (base32 + "112hmmvdwg8xz90w1bsbzc55y4xi9jj4dqy0q4bsgp49x58r92rb")))) + (properties `((upstream-name . "gprofiler2"))) + (build-system r-build-system) + (propagated-inputs + `(("r-crosstalk" ,r-crosstalk) + ("r-dplyr" ,r-dplyr) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-jsonlite" ,r-jsonlite) + ("r-plotly" ,r-plotly) + ("r-rcurl" ,r-rcurl) + ("r-tidyr" ,r-tidyr) + ("r-viridislite" ,r-viridislite))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://cran.r-project.org/web/packages/gprofiler2/") + (synopsis "Interface to the g:Profiler toolset") + (description + "This package provides a toolset for functional enrichment analysis and +visualization, gene/protein/SNP identifier conversion and mapping orthologous +genes across species via @url{https://biit.cs.ut.ee/gprofiler,g:Profiler}. +The main tools are: + +@enumerate +@item @code{g:GOSt}, functional enrichment analysis and visualization of gene + lists; +@item @code{g:Convert}, gene/protein/transcript identifier conversion across + various namespaces; +@item @code{g:Orth}, orthology search across species; +@item @code{g:SNPense}, mapping SNP rs identifiers to chromosome positions, + genes and variant effects. +@end enumerate + +This package is an R interface corresponding to the 2019 update of +@code{g:Profiler} and provides access to versions @code{e94_eg41_p11} and +higher.") + (license license:gpl2+))) + (define-public r-oenb (package (name "r-oenb")