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gnu: r-mzr: Fix linking.

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* gnu/packages/bioinformatics.scm (r-mzr)[arguments]: Fix linking with rhdf5
libraries.
This commit is contained in:
Ricardo Wurmus 2020-11-21 07:36:40 +01:00
parent badb4678bd
commit 471ceb5e5e
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1 changed files with 7 additions and 2 deletions
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gnu/packages/bioinformatics.scm
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@ -9701,9 +9701,14 @@ proteomics packages.")
(lambda _ (lambda _
(substitute* "src/Makevars" (substitute* "src/Makevars"
(("\\./boost/libs.*") "") (("\\./boost/libs.*") "")
(("ARCH_OBJS=" line) ;; This is to avoid having a plain directory on the list of
;; libraries to link.
(("\\(RHDF5_LIBS\\)" match)
(string-append match "/libhdf5.a"))
(("PKG_LIBS=") "PKG_LIBS=$(BOOST_LIBS) ")
(("\\ARCH_OBJS=" line)
(string-append line (string-append line
"\nARCH_LIBS=-lboost_system -lboost_regex \ "\nBOOST_LIBS=-lboost_system -lboost_regex \
-lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n"))) -lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n")))
#t))))) #t)))))
(inputs (inputs