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gnu: Add r-airpart.

* gnu/packages/bioconductor.scm (r-airpart): New variable.
Mădălin Ionel Patrașcu 2022-05-03 08:53:11 +02:00 committed by Ricardo Wurmus
parent 3d16f748fb
commit 49b696cb58
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@ -2082,6 +2082,53 @@ using the linear model features implemented in limma. Standard Bioconductor
objects are used so that other packages could be used as well.")
(license license:gpl3)))
(define-public r-airpart
(package
(name "r-airpart")
(version "1.4.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "airpart" version))
(sha256
(base32
"0ljankgvgf8rby4z340wxx8v7acs9yz955p3a40jl6y8rz1svc06"))))
(properties `((upstream-name . "airpart")))
(build-system r-build-system)
(propagated-inputs
(list r-apeglm
r-clue
r-complexheatmap
r-dplyr
r-dynamictreecut
r-emdbook
r-forestplot
r-ggplot2
r-lpsolve
r-matrixstats
r-mclust
r-pbapply
r-plyr
r-rcolorbrewer
r-rlang
r-s4vectors
r-scater
r-singlecellexperiment
r-smurf
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/airpart")
(synopsis "Differential cell-type-specific allelic imbalance")
(description
"The airpart package identifies sets of genes displaying differential
cell-type-specific allelic imbalance across cell types or states, utilizing
single-cell allelic counts. It makes use of a generalized fused lasso with
binomial observations of allelic counts to partition cell types by their
allelic imbalance. Alternatively, a nonparametric method for partitioning
cell types is offered. The package includes a number of visualizations and
quality control functions for examining single cell allelic imbalance
datasets.")
(license license:gpl2)))
(define-public r-amountain
(package
(name "r-amountain")