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gnu: Add r-airpart.

* gnu/packages/bioconductor.scm (r-airpart): New variable.
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Mădălin Ionel Patrașcu 2022-05-03 08:53:11 +02:00 committed by Ricardo Wurmus
parent 3d16f748fb
commit 49b696cb58
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@ -2082,6 +2082,53 @@ using the linear model features implemented in limma. Standard Bioconductor
objects are used so that other packages could be used as well.") objects are used so that other packages could be used as well.")
(license license:gpl3))) (license license:gpl3)))
(define-public r-airpart
(package
(name "r-airpart")
(version "1.4.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "airpart" version))
(sha256
(base32
"0ljankgvgf8rby4z340wxx8v7acs9yz955p3a40jl6y8rz1svc06"))))
(properties `((upstream-name . "airpart")))
(build-system r-build-system)
(propagated-inputs
(list r-apeglm
r-clue
r-complexheatmap
r-dplyr
r-dynamictreecut
r-emdbook
r-forestplot
r-ggplot2
r-lpsolve
r-matrixstats
r-mclust
r-pbapply
r-plyr
r-rcolorbrewer
r-rlang
r-s4vectors
r-scater
r-singlecellexperiment
r-smurf
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/airpart")
(synopsis "Differential cell-type-specific allelic imbalance")
(description
"The airpart package identifies sets of genes displaying differential
cell-type-specific allelic imbalance across cell types or states, utilizing
single-cell allelic counts. It makes use of a generalized fused lasso with
binomial observations of allelic counts to partition cell types by their
allelic imbalance. Alternatively, a nonparametric method for partitioning
cell types is offered. The package includes a number of visualizations and
quality control functions for examining single cell allelic imbalance
datasets.")
(license license:gpl2)))
(define-public r-amountain (define-public r-amountain
(package (package
(name "r-amountain") (name "r-amountain")