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gnu: python2-warpedlmm: Fix build. 

* gnu/packages/bioinformatics.scm (python2-warpedlmm)[propagated-inputs]: Add
python2-weave.
[arguments]: Disable tests and add "use-weave" phase.
master
Ricardo Wurmus 2020-04-30 13:00:50 +02:00
parent ed33317893
commit 4a148c6da3
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GPG Key ID: 197A5888235FACAC
1 changed files with 12 additions and 2 deletions
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14
gnu/packages/bioinformatics.scm
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@ -4942,14 +4942,24 @@ files and writing bioinformatics applications.")
"1agfz6zqa8nc6cw47yh0s3y14gkpa9wqazwcj7mwwj3ffnw39p3j")))) "1agfz6zqa8nc6cw47yh0s3y14gkpa9wqazwcj7mwwj3ffnw39p3j"))))
(build-system python-build-system) (build-system python-build-system)
(arguments (arguments
`(#:python ,python-2)) ; requires Python 2.7 `(#:python ,python-2 ; requires Python 2.7
#:tests? #f ; test data are not included
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'use-weave
(lambda _
(substitute* "warpedlmm/util/linalg.py"
(("from scipy import linalg, weave")
"from scipy import linalg\nimport weave"))
#t)))))
(propagated-inputs (propagated-inputs
`(("python-scipy" ,python2-scipy) `(("python-scipy" ,python2-scipy)
("python-numpy" ,python2-numpy) ("python-numpy" ,python2-numpy)
("python-matplotlib" ,python2-matplotlib) ("python-matplotlib" ,python2-matplotlib)
("python-fastlmm" ,python2-fastlmm) ("python-fastlmm" ,python2-fastlmm)
("python-pandas" ,python2-pandas) ("python-pandas" ,python2-pandas)
("python-pysnptools" ,python2-pysnptools))) ("python-pysnptools" ,python2-pysnptools)
("python-weave" ,python2-weave)))
(native-inputs (native-inputs
`(("python-mock" ,python2-mock) `(("python-mock" ,python2-mock)
("python-nose" ,python2-nose) ("python-nose" ,python2-nose)