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gnu: Add r-organism-dplyr.

* gnu/packages/bioconductor.scm (r-organism-dplyr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Mădălin Ionel Patrașcu 2022-08-22 13:26:27 +02:00 committed by Ricardo Wurmus
parent 090663a7a5
commit 4a6c6484df
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1 changed files with 39 additions and 0 deletions

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@ -5062,6 +5062,45 @@ proteowizard library for mzML and mzIdentML. The netCDF reading code has
previously been used in XCMS.")
(license license:artistic2.0)))
(define-public r-organism-dplyr
(package
(name "r-organism-dplyr")
(version "1.24.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Organism.dplyr" version))
(sha256
(base32
"0j29f85d66c45ww3417xx376vpz0mmvga5n7h2cl1sd4h70b55as"))))
(properties `((upstream-name . "Organism.dplyr")))
(build-system r-build-system)
(propagated-inputs
(list r-annotationdbi
r-annotationfilter
r-biocfilecache
r-dbi
r-dbplyr
r-dplyr
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-iranges
r-rlang
r-rsqlite
r-s4vectors
r-tibble))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/Organism.dplyr")
(synopsis "Dplyr-based access to Bioconductor annotation resources")
(description
"This package provides an alternative interface to Bioconductor @code{
annotation} resources, in particular the gene identifier mapping functionality
of the @code{org} packages (e.g., @code{org.Hs.eg.db}) and the genome coordinate
functionality of the @code{TxDb} packages (e.g.,
@code{TxDb.Hsapiens.UCSC.hg38.knownGene}).")
(license license:artistic2.0)))
(define-public r-organismdbi
(package
(name "r-organismdbi")