gnu: Add r-msfeatures.
* gnu/packages/bioconductor.scm (r-msfeatures): New variable.
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@ -13100,6 +13100,38 @@ well as misc helper functions, that are used across high-level data structure
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within the R for Mass Spectrometry packages.")
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within the R for Mass Spectrometry packages.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-msfeatures
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(package
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(name "r-msfeatures")
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(version "1.2.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "MsFeatures" version))
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(sha256
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(base32 "020ifrijlzdd3qk4bhd9z4knj5d87ildrkl3wcmxvwkvs9rbh8rq"))))
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(properties `((upstream-name . "MsFeatures")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-mscoreutils" ,r-mscoreutils)
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("r-protgenerics" ,r-protgenerics)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://github.com/RforMassSpectrometry/MsFeatures")
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(synopsis "Functionality for mass spectrometry features")
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(description
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"The MsFeature package defines functionality for Mass Spectrometry
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features. This includes functions to group (LC-MS) features based on some of
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their properties, such as retention time (coeluting features), or correlation
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of signals across samples. This packge hence allows to group features, and
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its results can be used as an input for the @code{QFeatures} package which
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allows to aggregate abundance levels of features within each group. This
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package defines concepts and functions for base and common data types,
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implementations for more specific data types are expected to be implemented in
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the respective packages (such as e.g. @code{xcms}).")
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(license license:artistic2.0)))
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(define-public r-biocio
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(define-public r-biocio
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(package
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(package
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(name "r-biocio")
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(name "r-biocio")
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