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gnu: Add r-cistopic-next.

* gnu/packages/bioconductor.scm (r-cistopic-next): New variable.
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Ricardo Wurmus 2021-06-29 12:28:19 +02:00
parent 05238ae30e
commit 4aa90cb4b3
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@ -10249,6 +10249,46 @@ includes functionalities to identify cell states based on the contribution of
cisTopics and explore the nature and regulatory proteins driving them.") cisTopics and explore the nature and regulatory proteins driving them.")
(license license:gpl3))) (license license:gpl3)))
(define-public r-cistopic-next
(let ((commit "04cecbb9d1112fcc1a6edc28b5a506bcb49f2803")
(revision "1"))
(package
(inherit r-cistopic)
(name "r-cistopic-next")
;; The DESCRIPTION file says this is version 0.3.0, which is a bit odd
;; since the previous release is 2.1.0. Oh well.
(version (git-version "0.3.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/aertslab/cisTopic")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"11cg9szlysnsjiaahda4k5v2vh4rxx27zhz53hafgaq9mdz0kgi2"))))
(properties `((upstream-name . "cisTopic")))
(propagated-inputs
`(("r-aucell" ,r-aucell)
("r-data-table" ,r-data-table)
("r-dosnow" ,r-dosnow)
("r-dplyr" ,r-dplyr)
("r-dt" ,r-dt)
("r-feather" ,r-feather)
("r-fitdistrplus" ,r-fitdistrplus)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-lda" ,r-lda)
("r-matrix" ,r-matrix)
("r-plyr" ,r-plyr)
("r-rcistarget" ,r-rcistarget)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-text2vec" ,r-text2vec)))
(native-inputs
`(("r-knitr" ,r-knitr))))))
(define-public r-genie3 (define-public r-genie3
(package (package
(name "r-genie3") (name "r-genie3")