gnu: Add r-cistopic-next.
* gnu/packages/bioconductor.scm (r-cistopic-next): New variable.master
parent
05238ae30e
commit
4aa90cb4b3
|
@ -10249,6 +10249,46 @@ includes functionalities to identify cell states based on the contribution of
|
||||||
cisTopics and explore the nature and regulatory proteins driving them.")
|
cisTopics and explore the nature and regulatory proteins driving them.")
|
||||||
(license license:gpl3)))
|
(license license:gpl3)))
|
||||||
|
|
||||||
|
(define-public r-cistopic-next
|
||||||
|
(let ((commit "04cecbb9d1112fcc1a6edc28b5a506bcb49f2803")
|
||||||
|
(revision "1"))
|
||||||
|
(package
|
||||||
|
(inherit r-cistopic)
|
||||||
|
(name "r-cistopic-next")
|
||||||
|
;; The DESCRIPTION file says this is version 0.3.0, which is a bit odd
|
||||||
|
;; since the previous release is 2.1.0. Oh well.
|
||||||
|
(version (git-version "0.3.0" revision commit))
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method git-fetch)
|
||||||
|
(uri (git-reference
|
||||||
|
(url "https://github.com/aertslab/cisTopic")
|
||||||
|
(commit commit)))
|
||||||
|
(file-name (git-file-name name version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"11cg9szlysnsjiaahda4k5v2vh4rxx27zhz53hafgaq9mdz0kgi2"))))
|
||||||
|
(properties `((upstream-name . "cisTopic")))
|
||||||
|
(propagated-inputs
|
||||||
|
`(("r-aucell" ,r-aucell)
|
||||||
|
("r-data-table" ,r-data-table)
|
||||||
|
("r-dosnow" ,r-dosnow)
|
||||||
|
("r-dplyr" ,r-dplyr)
|
||||||
|
("r-dt" ,r-dt)
|
||||||
|
("r-feather" ,r-feather)
|
||||||
|
("r-fitdistrplus" ,r-fitdistrplus)
|
||||||
|
("r-genomicranges" ,r-genomicranges)
|
||||||
|
("r-ggplot2" ,r-ggplot2)
|
||||||
|
("r-lda" ,r-lda)
|
||||||
|
("r-matrix" ,r-matrix)
|
||||||
|
("r-plyr" ,r-plyr)
|
||||||
|
("r-rcistarget" ,r-rcistarget)
|
||||||
|
("r-rtracklayer" ,r-rtracklayer)
|
||||||
|
("r-s4vectors" ,r-s4vectors)
|
||||||
|
("r-text2vec" ,r-text2vec)))
|
||||||
|
(native-inputs
|
||||||
|
`(("r-knitr" ,r-knitr))))))
|
||||||
|
|
||||||
(define-public r-genie3
|
(define-public r-genie3
|
||||||
(package
|
(package
|
||||||
(name "r-genie3")
|
(name "r-genie3")
|
||||||
|
|
Reference in New Issue