gnu: Add r-cistopic-next.
* gnu/packages/bioconductor.scm (r-cistopic-next): New variable.master
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@ -10249,6 +10249,46 @@ includes functionalities to identify cell states based on the contribution of
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cisTopics and explore the nature and regulatory proteins driving them.")
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(license license:gpl3)))
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(define-public r-cistopic-next
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(let ((commit "04cecbb9d1112fcc1a6edc28b5a506bcb49f2803")
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(revision "1"))
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(package
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(inherit r-cistopic)
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(name "r-cistopic-next")
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;; The DESCRIPTION file says this is version 0.3.0, which is a bit odd
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;; since the previous release is 2.1.0. Oh well.
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(version (git-version "0.3.0" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/aertslab/cisTopic")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"11cg9szlysnsjiaahda4k5v2vh4rxx27zhz53hafgaq9mdz0kgi2"))))
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(properties `((upstream-name . "cisTopic")))
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(propagated-inputs
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`(("r-aucell" ,r-aucell)
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("r-data-table" ,r-data-table)
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("r-dosnow" ,r-dosnow)
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("r-dplyr" ,r-dplyr)
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("r-dt" ,r-dt)
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("r-feather" ,r-feather)
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("r-fitdistrplus" ,r-fitdistrplus)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-lda" ,r-lda)
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("r-matrix" ,r-matrix)
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("r-plyr" ,r-plyr)
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("r-rcistarget" ,r-rcistarget)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-text2vec" ,r-text2vec)))
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(native-inputs
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`(("r-knitr" ,r-knitr))))))
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(define-public r-genie3
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(package
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(name "r-genie3")
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