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gnu: tabixpp: Update to 1.1.2.

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* gnu/packages/bioinformatics.scm (tabixpp): Update to 1.1.2.
[source]: Simplify snippet.
[inputs]: Add curl.
[arguments]: Simplify and reformat.
This commit is contained in:
Ricardo Wurmus 2023-04-25 18:16:19 +02:00
parent 8664c6230e
commit 4ad51f5914
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GPG key ID: 197A5888235FACAC
1 changed files with 21 additions and 22 deletions
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gnu/packages/bioinformatics.scm
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@ -16832,7 +16832,7 @@ mutations from scRNA-Seq data.")
(define-public tabixpp (define-public tabixpp
(package (package
(name "tabixpp") (name "tabixpp")
(version "1.1.0") (version "1.1.2")
(source (origin (source (origin
(method git-fetch) (method git-fetch)
(uri (git-reference (uri (git-reference
@ -16840,14 +16840,13 @@ mutations from scRNA-Seq data.")
(commit (string-append "v" version)))) (commit (string-append "v" version))))
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256
(base32 "1k2a3vbq96ic4lw72iwp5s3mwwc4xhdffjj584yn6l9637q9j1yd")) (base32 "00aqs147yn8zcvxims5njwxqsbnlbjv7lnmiwqy80bfdcbhljkqf"))
(modules '((guix build utils))) (modules '((guix build utils)))
(snippet (snippet
#~(begin '(delete-file-recursively "htslib"))))
(delete-file-recursively "htslib")))))
(build-system gnu-build-system) (build-system gnu-build-system)
(inputs (inputs
(list bzip2 htslib xz zlib)) (list bzip2 curl htslib xz zlib))
(arguments (arguments
(list #:make-flags #~(list (string-append "CC=" #$(cc-for-target)) (list #:make-flags #~(list (string-append "CC=" #$(cc-for-target))
(string-append "CXX=" #$(cxx-for-target)) (string-append "CXX=" #$(cxx-for-target))
@ -16867,29 +16866,29 @@ mutations from scRNA-Seq data.")
"-shared" "-o" "libtabixpp.so" "tabix.o" "-lhts") "-shared" "-o" "libtabixpp.so" "tabix.o" "-lhts")
(invoke #$(ar-for-target) "rcs" "libtabixpp.a" "tabix.o"))) (invoke #$(ar-for-target) "rcs" "libtabixpp.a" "tabix.o")))
(replace 'install (replace 'install
(lambda* (#:key outputs #:allow-other-keys) (lambda _
(let* ((out (assoc-ref outputs "out")) (let ((lib (string-append #$output "/lib"))
(lib (string-append out "/lib")) (bin (string-append #$output "/bin")))
(bin (string-append out "/bin")))
(install-file "tabix++" bin) (install-file "tabix++" bin)
(install-file "libtabixpp.so" lib) (install-file "libtabixpp.so" lib)
(install-file "libtabixpp.a" lib) (install-file "libtabixpp.a" lib)
(install-file "tabix.hpp" (string-append out "/include")) (install-file "tabix.hpp" (string-append #$output "/include"))
(mkdir-p (string-append lib "/pkgconfig")) (mkdir-p (string-append lib "/pkgconfig"))
(with-output-to-file (string-append lib "/pkgconfig/tabixpp.pc") (with-output-to-file (string-append lib "/pkgconfig/tabixpp.pc")
(lambda _ (lambda _
(format #t "prefix=~a~@ (format #t "\
exec_prefix=${prefix}~@ prefix=~a~@
libdir=${exec_prefix}/lib~@ exec_prefix=${prefix}~@
includedir=${prefix}/include~@ libdir=${exec_prefix}/lib~@
~@ includedir=${prefix}/include~@
~@ ~@
Name: libtabixpp~@ ~@
Version: ~a~@ Name: libtabixpp~@
Description: C++ wrapper around tabix project~@ Version: ~a~@
Libs: -L${libdir} -ltabixpp~@ Description: C++ wrapper around tabix project~@
Cflags: -I${includedir}~%" Libs: -L${libdir} -ltabixpp~@
out #$version))))))))) Cflags: -I${includedir}~%"
#$output #$version)))))))))
(home-page "https://github.com/ekg/tabixpp") (home-page "https://github.com/ekg/tabixpp")
(synopsis "C++ wrapper around tabix project") (synopsis "C++ wrapper around tabix project")
(description "This is a C++ wrapper around the Tabix project which abstracts (description "This is a C++ wrapper around the Tabix project which abstracts