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gnu: Add r-singler.

* gnu/packages/bioconductor.scm (r-singler): New variable.
master
Ricardo Wurmus 2021-12-16 22:39:25 +01:00
parent 443110cd86
commit 4b58ebd845
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@ -13064,6 +13064,38 @@ factors for each cell, along with the usual metadata for genes and
libraries.")
(license license:gpl3)))
(define-public r-singler
(package
(name "r-singler")
(version "1.8.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "SingleR" version))
(sha256
(base32 "19lsn3cpghkhfbx4jqgbwwrnacrl7vj3r91ymd1gk02c9pn5dmci"))))
(properties `((upstream-name . "SingleR")))
(build-system r-build-system)
(propagated-inputs
(list r-beachmat
r-biocneighbors
r-biocparallel
r-biocsingular
r-delayedarray
r-delayedmatrixstats
r-matrix
r-rcpp
r-s4vectors
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/LTLA/SingleR")
(synopsis "Reference-based single-cell RNA-seq annotation")
(description
"This package performs unbiased cell type recognition from single-cell
RNA sequencing data, by leveraging reference transcriptomic datasets of pure
cell types to infer the cell of origin of each single cell independently.")
(license license:gpl3)))
(define-public r-scuttle
(package
(name "r-scuttle")