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gnu: Add r-msa.

* gnu/packages/bioconductor.scm (r-msa): New variable.
master
Ricardo Wurmus 2023-02-27 20:28:53 +01:00
parent 086e426d20
commit 4db367f8ae
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@ -6850,6 +6850,37 @@ characterization and visualization of a wide range of mutational patterns
in SNV base substitution data.")
(license license:expat)))
(define-public r-msa
(package
(name "r-msa")
(version "1.30.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "msa" version))
(sha256
(base32
"064hmry0zhmpchxgjsw0krsybr9v9gbsz26zmj2a39pg1nggwbq4"))))
(properties `((upstream-name . "msa")))
(build-system r-build-system)
(propagated-inputs
(list r-biocgenerics
r-biostrings
r-iranges
r-rcpp
r-s4vectors))
(native-inputs (list r-knitr))
(home-page "http://www.bioinf.jku.at/software/msa/")
(synopsis "Multiple sequence alignment")
(description
"The msa package provides a unified R/Bioconductor interface to the
multiple sequence alignment algorithms ClustalW, ClustalOmega, and Muscle.
All three algorithms are integrated in the package, therefore, they do not
depend on any external software tools and are available for all major
platforms. The multiple sequence alignment algorithms are complemented by a
function for pretty-printing multiple sequence alignments using the LaTeX
package TeXshade.")
(license license:gpl2+)))
(define-public r-msnbase
(package
(name "r-msnbase")