diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2b31a46ef8..eae0a29b90 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4271,24 +4271,24 @@ splice junctions between exons.") "1vf3iwkzxqkzhcfz2q3qyvcv3jrvbb012qy21pfgjl8lv20ywfr1")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ;no "check" target - #:make-flags (list "CFLAGS=-fcommon" - (string-append "CC=" ,(cc-for-target))) - #:phases - (modify-phases %standard-phases - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin")) - (lib (string-append out "/lib")) - (doc (string-append out "/share/doc/bwa")) - (man (string-append out "/share/man/man1"))) - (install-file "bwa" bin) - (install-file "libbwa.a" lib) - (install-file "README.md" doc) - (install-file "bwa.1" man)))) - ;; no "configure" script - (delete 'configure)))) + (list #:tests? #f ;no "check" target + #:make-flags #~(list "CFLAGS=-fcommon" + (string-append "CC=" #$(cc-for-target))) + #:phases + #~(modify-phases %standard-phases + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (lib (string-append out "/lib")) + (doc (string-append out "/share/doc/bwa")) + (man (string-append out "/share/man/man1"))) + (install-file "bwa" bin) + (install-file "libbwa.a" lib) + (install-file "README.md" doc) + (install-file "bwa.1" man)))) + ;; no "configure" script + (delete 'configure)))) (inputs (list zlib)) (supported-systems '("x86_64-linux" "aarch64-linux")) (home-page "https://bio-bwa.sourceforge.net/") @@ -4306,7 +4306,8 @@ and more accurate. BWA-MEM also has better performance than BWA-backtrack for (license license:gpl3+))) (define-public bwa-pssm - (package (inherit bwa) + (package + (inherit bwa) (name "bwa-pssm") (version "0.5.11") (source (origin @@ -4321,12 +4322,12 @@ and more accurate. BWA-MEM also has better performance than BWA-backtrack for (build-system gnu-build-system) (arguments (substitute-keyword-arguments (package-arguments bwa) - ((#:phases phases '%standard-phases) - `(modify-phases ,phases - (add-after 'unpack 'patch-C-error - (lambda _ - (substitute* "pssm.c" - (("inline int map") "int map")))))))) + ((#:phases phases #~%standard-phases) + #~(modify-phases #$phases + (add-after 'unpack 'patch-C-error + (lambda _ + (substitute* "pssm.c" + (("inline int map") "int map")))))))) (inputs (list gdsl zlib perl)) ;; https://bwa-pssm.binf.ku.dk is down, and all Web Archived copies are