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gnu: Add r-oscope.

* gnu/packages/bioconductor.scm (r-oscope): New variable.
Navid Afkhami 2023-03-03 11:56:25 +01:00 committed by Ricardo Wurmus
parent 98cac9dcab
commit 4f681cdbc2
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1 changed files with 26 additions and 0 deletions

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@ -7425,6 +7425,32 @@ annotation packages each of which has its own schema by taking advantage of
the fact that each of these packages implements a select methods.")
(license license:artistic2.0)))
(define-public r-oscope
(package
(name "r-oscope")
(version "1.28.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "Oscope" version))
(sha256
(base32
"0454f9yc0jmg3mcq9264wb5v2n8n0kaf801hlvsiy1xa3baj3h29"))))
(properties `((upstream-name . "Oscope")))
(build-system r-build-system)
(propagated-inputs (list r-biocparallel r-cluster r-ebseq r-testthat))
(home-page "https://bioconductor.org/packages/Oscope")
(synopsis
"Oscillatory genes identifier in unsynchronized single cell RNA-seq")
(description
"Oscope is a oscillatory genes identifier in unsynchronized single cell
RNA-seq. This statistical pipeline has been developed to identify and recover
the base cycle profiles of oscillating genes in an unsynchronized single cell
RNA-seq experiment. The Oscope pipeline includes three modules: a sine model
module to search for candidate oscillator pairs; a K-medoids clustering module
to cluster candidate oscillators into groups; and an extended nearest
insertion module to recover the base cycle order for each oscillator group.")
(license license:asl2.0)))
(define-public r-pcaexplorer
(package
(name "r-pcaexplorer")