gnu: Add r-oscope.
* gnu/packages/bioconductor.scm (r-oscope): New variable.
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@ -7425,6 +7425,32 @@ annotation packages each of which has its own schema by taking advantage of
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the fact that each of these packages implements a select methods.")
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the fact that each of these packages implements a select methods.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-oscope
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(package
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(name "r-oscope")
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(version "1.28.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "Oscope" version))
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(sha256
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(base32
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"0454f9yc0jmg3mcq9264wb5v2n8n0kaf801hlvsiy1xa3baj3h29"))))
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(properties `((upstream-name . "Oscope")))
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(build-system r-build-system)
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(propagated-inputs (list r-biocparallel r-cluster r-ebseq r-testthat))
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(home-page "https://bioconductor.org/packages/Oscope")
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(synopsis
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"Oscillatory genes identifier in unsynchronized single cell RNA-seq")
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(description
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"Oscope is a oscillatory genes identifier in unsynchronized single cell
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RNA-seq. This statistical pipeline has been developed to identify and recover
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the base cycle profiles of oscillating genes in an unsynchronized single cell
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RNA-seq experiment. The Oscope pipeline includes three modules: a sine model
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module to search for candidate oscillator pairs; a K-medoids clustering module
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to cluster candidate oscillators into groups; and an extended nearest
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insertion module to recover the base cycle order for each oscillator group.")
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(license license:asl2.0)))
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(define-public r-pcaexplorer
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(define-public r-pcaexplorer
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(package
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(package
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(name "r-pcaexplorer")
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(name "r-pcaexplorer")
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