gnu: bpp-phyl: Update to 2.4.1.
* gnu/packages/bioinformatics.scm (bpp-phyl): Update to 2.4.1. [source]: Remove the commit and use the release version. Changed to the github repo. [arguments]: Remove the disabled parallel-build and out-of-source. [home-page]: Changed to new host Université Claude-Bernard Lyon 1. [synopsis]: Use proper capitalization.master
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@ -2244,37 +2244,28 @@ providing them a set of re-usable tools.")
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(license license:cecill-c)))
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(license license:cecill-c)))
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(define-public bpp-phyl
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(define-public bpp-phyl
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;; The last release was in 2014 and the recommended way to install from source
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;; is to clone the git repository, so we do this.
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;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
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(let ((commit "0c07167b629f68b569bf274d1ad0c4af83276ae2"))
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(package
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(package
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(name "bpp-phyl")
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(name "bpp-phyl")
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(version (string-append "2.2.0-1." (string-take commit 7)))
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(version "2.4.1")
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(source (origin
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(source (origin
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(method git-fetch)
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(method git-fetch)
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(uri (git-reference
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(uri (git-reference
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(url "http://biopp.univ-montp2.fr/git/bpp-phyl")
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(url "https://github.com/BioPP/bpp-phyl")
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(commit commit)))
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(commit (string-append "v" version))))
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(file-name (string-append name "-" version "-checkout"))
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(file-name (git-file-name name version))
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(sha256
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(sha256
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(base32
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(base32
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"1ssjgchzwj3iai26kyly7gwkdv8sk59nqhkb1wpap3sf5m6kyllh"))))
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"192zks6wyk903n06c2lbsscdhkjnfwms8p7jblsmk3lvjhdipb20"))))
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(build-system cmake-build-system)
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(build-system cmake-build-system)
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(arguments
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`(#:parallel-build? #f
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;; If out-of-source, test data is not copied into the build directory
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;; so the tests fail.
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#:out-of-source? #f))
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(inputs
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(inputs
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(list bpp-core bpp-seq))
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(list bpp-core bpp-seq))
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(home-page "http://biopp.univ-montp2.fr")
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(home-page "https://pbil.univ-lyon1.fr/bpp-doc/bpp-phyl/html/")
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(synopsis "Bio++ phylogenetic Library")
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(synopsis "Bio++ phylogenetic library")
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(description
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(description
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"Bio++ is a set of C++ libraries for Bioinformatics, including sequence
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"Bio++ is a set of C++ libraries for Bioinformatics, including sequence
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analysis, phylogenetics, molecular evolution and population genetics. This
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analysis, phylogenetics, molecular evolution and population genetics. This
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library provides phylogenetics-related modules.")
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library provides phylogenetics-related modules.")
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(license license:cecill-c))))
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(license license:cecill-c)))
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(define-public bpp-popgen
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(define-public bpp-popgen
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;; The last release was in 2014 and the recommended way to install from source
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;; The last release was in 2014 and the recommended way to install from source
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