me
/
guix
Archived
1
0
Fork 0
Code

gnu: bpp-phyl: Update to 2.4.1. 

* gnu/packages/bioinformatics.scm (bpp-phyl): Update to 2.4.1.

[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build and out-of-source.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
[synopsis]: Use proper capitalization.
master
Mădălin Ionel Patrașcu 2023-04-21 10:16:38 +02:00 committed by Ricardo Wurmus
parent 627049872b
commit 5107a8a1a3
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 20 additions and 29 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

49
gnu/packages/bioinformatics.scm
View File

@ -2244,37 +2244,28 @@ providing them a set of re-usable tools.")
(license license:cecill-c))) (license license:cecill-c)))
(define-public bpp-phyl (define-public bpp-phyl
;; The last release was in 2014 and the recommended way to install from source (package
;; is to clone the git repository, so we do this. (name "bpp-phyl")
;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page (version "2.4.1")
(let ((commit "0c07167b629f68b569bf274d1ad0c4af83276ae2")) (source (origin
(package (method git-fetch)
(name "bpp-phyl") (uri (git-reference
(version (string-append "2.2.0-1." (string-take commit 7))) (url "https://github.com/BioPP/bpp-phyl")
(source (origin (commit (string-append "v" version))))
(method git-fetch) (file-name (git-file-name name version))
(uri (git-reference (sha256
(url "http://biopp.univ-montp2.fr/git/bpp-phyl") (base32
(commit commit))) "192zks6wyk903n06c2lbsscdhkjnfwms8p7jblsmk3lvjhdipb20"))))
(file-name (string-append name "-" version "-checkout")) (build-system cmake-build-system)
(sha256 (inputs
(base32 (list bpp-core bpp-seq))
"1ssjgchzwj3iai26kyly7gwkdv8sk59nqhkb1wpap3sf5m6kyllh")))) (home-page "https://pbil.univ-lyon1.fr/bpp-doc/bpp-phyl/html/")
(build-system cmake-build-system) (synopsis "Bio++ phylogenetic library")
(arguments (description
`(#:parallel-build? #f "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
;; If out-of-source, test data is not copied into the build directory
;; so the tests fail.
#:out-of-source? #f))
(inputs
(list bpp-core bpp-seq))
(home-page "http://biopp.univ-montp2.fr")
(synopsis "Bio++ phylogenetic Library")
(description
"Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics. This analysis, phylogenetics, molecular evolution and population genetics. This
library provides phylogenetics-related modules.") library provides phylogenetics-related modules.")
(license license:cecill-c)))) (license license:cecill-c)))
(define-public bpp-popgen (define-public bpp-popgen
;; The last release was in 2014 and the recommended way to install from source ;; The last release was in 2014 and the recommended way to install from source