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gnu: bpp-core: Update to 2.4.1.

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* gnu/packages/bioinformatics.scm (bpp-core): Update to 2.4.1.

[source]: Remove the commit and use the release version. Changed to the github
stored sources.
[arguments]: Remove the disabled parallel-build.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
This commit is contained in:
Mădălin Ionel Patrașcu 2023-04-21 10:16:36 +02:00 • committed by Ricardo Wurmus
parent 7cfc226d1e
commit 51ef858c94
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GPG key ID: 197A5888235FACAC
1 changed files with 18 additions and 24 deletions
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gnu/packages/bioinformatics.scm
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@ -2220,26 +2220,20 @@ easy-to-perform steps.")
(license license:gpl3+))) (license license:gpl3+)))
(define-public bpp-core (define-public bpp-core
;; The last release was in 2014 and the recommended way to install from source
;; is to clone the git repository, so we do this.
;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
(let ((commit "7d8bced0d1a87291ea8dd7046b7fb5ff9c35c582"))
(package (package
(name "bpp-core") (name "bpp-core")
(version (string-append "2.2.0-1." (string-take commit 7))) (version "2.4.1")
(source (origin (source
(origin
(method git-fetch) (method git-fetch)
(uri (git-reference (uri (git-reference
(url "http://biopp.univ-montp2.fr/git/bpp-core") (url "https://github.com/BioPP/bpp-core")
(commit commit))) (commit (string-append "v" version))))
(file-name (string-append name "-" version "-checkout")) (file-name (git-file-name name version))
(sha256 (sha256
(base32 (base32 "0ma2cl677l7s0n5sffh66cy9lxp5wycm50f121g8rx85p95vkgwv"))))
"10djsq5vlnkilv436gnmh4irpk49v29pa69r6xiryg32xmvn909j"))))
(build-system cmake-build-system) (build-system cmake-build-system)
(arguments (home-page "https://pbil.univ-lyon1.fr/bpp-doc/bpp-core/html/index.html")
`(#:parallel-build? #f))
(home-page "http://biopp.univ-montp2.fr")
(synopsis "C++ libraries for Bioinformatics") (synopsis "C++ libraries for Bioinformatics")
(description (description
"Bio++ is a set of C++ libraries for Bioinformatics, including sequence "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
@ -2247,7 +2241,7 @@ analysis, phylogenetics, molecular evolution and population genetics. It is
Object Oriented and is designed to be both easy to use and computer efficient. Object Oriented and is designed to be both easy to use and computer efficient.
Bio++ intends to help programmers to write computer expensive programs, by Bio++ intends to help programmers to write computer expensive programs, by
providing them a set of re-usable tools.") providing them a set of re-usable tools.")
(license license:cecill-c)))) (license license:cecill-c)))
(define-public bpp-phyl (define-public bpp-phyl
;; The last release was in 2014 and the recommended way to install from source ;; The last release was in 2014 and the recommended way to install from source