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gnu: r-bsgenome: Move to (gnu packages bioconductor). 

* gnu/packages/bioinformatics.scm (r-bsgenome): Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome): ...to here.
master
zimoun 2021-05-21 22:25:37 +02:00 committed by Ricardo Wurmus
parent 90bbab5cff
commit 537d48d869
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2 changed files with 32 additions and 32 deletions
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33
gnu/packages/bioconductor.scm
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@ -4,7 +4,7 @@
;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2019, 2020, 2021 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
;;; Copyright © 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
@ -2080,6 +2080,37 @@ matching algorithms, and other utilities, for fast manipulation of large
biological sequences or sets of sequences.")
(license license:artistic2.0)))
(define-public r-bsgenome
(package
(name "r-bsgenome")
(version "1.58.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "BSgenome" version))
(sha256
(base32
"1gbvmxr6r57smgvhqgwspbcnwyk4hsfkxkpzzcs6470q03zfb4wq"))))
(properties
`((upstream-name . "BSgenome")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrixstats" ,r-matrixstats)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-xvector" ,r-xvector)))
(home-page "https://bioconductor.org/packages/BSgenome")
(synopsis "Infrastructure for Biostrings-based genome data packages")
(description
"This package provides infrastructure shared by all Biostrings-based
genome data packages and support for efficient SNP representation.")
(license license:artistic2.0)))
(define-public r-category
(package
(name "r-category")

31
gnu/packages/bioinformatics.scm
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@ -7976,37 +7976,6 @@ including VCF header and contents in RDF and JSON.")
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
(define-public r-bsgenome
(package
(name "r-bsgenome")
(version "1.58.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "BSgenome" version))
(sha256
(base32
"1gbvmxr6r57smgvhqgwspbcnwyk4hsfkxkpzzcs6470q03zfb4wq"))))
(properties
`((upstream-name . "BSgenome")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrixstats" ,r-matrixstats)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-xvector" ,r-xvector)))
(home-page "https://bioconductor.org/packages/BSgenome")
(synopsis "Infrastructure for Biostrings-based genome data packages")
(description
"This package provides infrastructure shared by all Biostrings-based
genome data packages and support for efficient SNP representation.")
(license license:artistic2.0)))
(define-public r-impute
(package
(name "r-impute")